Scaffold Ga0222712_10141738

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10141738
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1632
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F011218	Metagenome / Metatranscriptome	293	N
F015723	Metagenome / Metatranscriptome	252	Y
F039112	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_101417382	F011218	AGGA	MQYYTNPAKRRKIDFILAECASLFANCGSSYAERQQAKYKEQELLAQIAKLDHHFAIQCGYLQPNN
Ga0222712_101417383	F009600	N/A	MRIPTTEQLKSYHVVVGKVPSLNAFYASKHWTVRAKAKDKHCAEVLEQLQEYDCIPIQHVYITCKVNYRYDIDNSIMAVKFALDAFRKWGGVKDDSRAYVRKLKMEHDPDIHPDTAEITFQGLVVSQS
Ga0222712_101417384	F039112	N/A	MTLSLSQEVYTQAMQAQQAQIQALQNKVDELKARIEVLEQQAILFI
Ga0222712_101417385	F015723	N/A	MAKIISITPQGQWQDLFKLEVRFDNGDFGTAFAKSQTPSYSVGDEVEYSKNEKGTIKIQRPFGGGGSFGGSFANTSKVSGDERSASIIRQVALKAAVEYACAAGHDVNTILANAETFNAWMSGQSAAPATHTQHFANRNDMPF