Scaffold Ga0222712_10049091

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10049091
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3167
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F010908	Metagenome / Metatranscriptome	297	Y
F015723	Metagenome / Metatranscriptome	252	Y
F039112	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100490914	F010908	GAGG	MKQIFSPYQPLECFRVDGVDYICLDYQIIQDNEDKLVEWCSFFKFKRLSDHKHFEVPITKIIETKKEGRATLCKCK
Ga0222712_100490915	F009202	N/A	MYPSEELHDLYIREKQLMLSGTAMWLAKQAADKASGREVQDEMIDHLMNVHHADQLLQQFIDYRLFANRKLNEVMLANAQLRVNNEEMILEIERLQRIIEDNL
Ga0222712_100490917	F015723	N/A	MAKIISITPKGQWQDLFKLELRFDNGDFGTAFAKSPTPSYAVGDEVDYTKNEKGTIKINKPFNGGFSGGNGGSFATASRTAGDDRSASIIRQVALKAAVEYACAAGHDVNTILANAATFNEWMNGNQSTATHQEHFASRNESPF
Ga0222712_100490918	F039112	N/A	SLSQDTYSQTIVAQQAQIKALQDKVQELNARIEVLEQQAVLFI