Scaffold Ga0222712_10029291

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10029291
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4393
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002135	Metagenome / Metatranscriptome	590	Y
F013521	Metagenome / Metatranscriptome	270	Y
F048985	Metagenome / Metatranscriptome	147	Y
F083918	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1002929112	F083918	AGAAGG	MGYAEIIDGSGYLARFENDKITIEPSGDKCMSCNDDRLMHDGKYLVCTQCHCRQ
Ga0222712_1002929113	F013521	AGGA	MHPQFKCNGCKRKTEFLWLESFDTPDGFKAYQCMDCGAVGVKNIAEALHIPDSDISRCTKCG
Ga0222712_100292913	F048985	AGG	MPQTSQVTVTTTPTLLVTANRADQMVYLHSKHTIYVGGPGVTTSTGYLMDNGDKLSMMLSDNESLYGVAASGSGVMQVMVTIN
Ga0222712_100292917	F002135	N/A	MATTRKRKKINRRRVRKTPEPLSKLEVFYIAKHEMYKAARKAGFSESVALYLMDSPESMPDWVVGDKGIIPRIPTPDEDED