NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10012060

Scaffold Ga0222712_10012060


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10012060 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7708
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F000468Metagenome1102Y
F002135Metagenome / Metatranscriptome590Y
F032636Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1001206011F002135N/AMANTRKRTTRKKVNRRVVRHTPEPLTKLDQFYIAKHEIFKAARRAGFSESVALYLMDSDRMPDWIVGDGNIIPVIPTPDEDDD
Ga0222712_1001206017F000468GGAMSAFTCDWKLSVEGVEYTDVTIADLTHFAGRQDVYSQPTASYISCTIIAPNNETYAFDINDGITLQIKDTSGTYVSLFGGNITDLTIEVEDTGSRATVVAYKIIALGALAKLQKTITDGVLSQDYDGNQILDLLDDLLLNSWNEVPAAETWTGYDATETWANAQDVGLGEIDTPGLYEMENRSASADTIYNIAAQIANSAFGYLYEDNQGNVGYADADHRQNYLLTNGYVELSANHALGRGLRTTTRAGDIRNDIYINYGNNFGSQKTATDATSIATYGYKSETINTVLHDATDAQAVADRYINQRAYPQPVFDTITFPINNPEIDDADRDALLGTFIGMPVNLKNLPNQISNGEFEGYVEGWSWSVSFNQLFITLTLSPTAYSQVAMRWNTTPITEAWNTLSTTLTWEYATIVA
Ga0222712_100120604F000141AGGAGMSNYTQFKCNGCKRNTEFLWLDSMDMPDGFKLYQCMDCGAVGVKNVVEALSIPDSDICRCDKCGGWRWQTKPCHTCQLIASK
Ga0222712_100120609F032636N/AMAALLMAENPMGRETDYQPRTIDDHIDQVEDIGVI
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