Scaffold Ga0222712_10005510

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10005510
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12796
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (65.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F008814	Metagenome / Metatranscriptome	327	Y
F011394	Metagenome / Metatranscriptome	291	Y
F014140	Metagenome / Metatranscriptome	265	Y
F066776	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000551014	F000671	GAGG	MSEKVLCYCCNKTKNSLSAKKSTLLSINLLLCETCINDKLEPRWVVILAGRQNGHEFVKEYVSKKRYPGDEILASELLI
Ga0222712_1000551016	F011394	GGA	MTFIDKDKNHFKYGINQWTGEPNKPVFYNKEMALKIREIKKPVHDLKMDIIKYPEFLAIRLYEDNFARYDGSIRMQVIEYVEMVKKILESYGVRVELEGKPGNGK
Ga0222712_1000551018	F066776	AGG	MLNLTLEGVEIFIKRSQSKLQESFWNNYELVIWKKDSGGFSDVKGMYRNSSWGKAEKFSVDEDGVWKLPKKYVKYFK
Ga0222712_1000551020	F014140	N/A	MDRYRIKLDVEVEVEAFNPEDASEYINDIFNIDDEIKKVNIVKITKK
Ga0222712_100055108	F008814	GGAGG	LANLTVLEEIIKEIGEELYQRWYNALAIEDRTEEASRAMSVNAGETSVWVIQTFMNKFNAAAEELKNQSIANN