Scaffold Ga0222712_10004743

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10004743
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14076
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002489	Metagenome / Metatranscriptome	554	Y
F008357	Metagenome / Metatranscriptome	334	Y
F050376	Metagenome / Metatranscriptome	145	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000474312	F002489	AGGA	MNEEPVNLEDNLPMVNYIMLHRIYDMLTLIANKVVGSQDTEKMVEYHKQGYLLGPDPSYTPGEENE
Ga0222712_1000474322	F085708	AGAAG	MNRLLTSLVQLAIAIPALYMGRMMWREIVADFREWDKSH
Ga0222712_1000474323	F050376	AGG	MTLDEYKALVEAQRKASLLKAIATMSEANDKMGSLFNTKEAN
Ga0222712_1000474324	F000447	AGGAGG	MGYVEIFRLDDEGAGWVDLEDATPEELLNLEIGLFQEGAL
Ga0222712_100047436	F008357	AGGAG	MAVTKNFEVDQNATFTFEVQYTLDDETTPIDITGASAKMQVRDTQGGSKLAFTLTSPSGGIVIDGPTGTVSVKMTPTQTNKLFYPKSAYDIMMIDSNGNKIKLLEGFMTLSRSVTI