NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10004613

Scaffold Ga0222712_10004613


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10004613 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14313
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007222Metagenome / Metatranscriptome355Y
F015073Metagenome / Metatranscriptome257Y
F055557Metagenome / Metatranscriptome138N
F085385Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000461316F085385GGAGMYTIQEVAIWMLLGVLAGFMAGYANGLREGKREGFIRGKVAARRNAEIR
Ga0222712_1000461317F015073GGAGMGFLDNYETVNQKVIRLHATYPTNRIETSIIDWNSEKGFILIECRIYRNYEDEKPAAIDYAHGMVGAYNPQMKRWYIEDTVSSAIGRCASVVLGTETKPNLESMEQVETMPKAFIEEDLWSKPFGEDGFATAQSAISEIQTKLGGELIAEAPICAHGHMVLREGISPKTNKPYRGHVCVEKVKANQCSPIWYEVNSTGGWKARS
Ga0222712_1000461319F055557GGAGMKLKITHEDEWLAAKVAIERVEEIEGKPDHVSRYNKSLSFHDYICEIAESVGAEIAVAKYFGIRDFNPRASRFKRTADVGSIIEVKWTKYDSGSLIIYDSDRNTDIAILVTGKSPNYVLKGWIPVTIAKNQKWRRRDQPTYWVEQYNLHPIENLRRSSHGEATLPMSG
Ga0222712_100046138F007222GGAGMANKQGTFAIQVEPAALRNLIQTLNLLDKETQNEVRDAAYPLSQRLAGQLLMFSQSAPSPQTKLVAQSITAKRDRLIRVDVGGSKKVGRKYGGEQSKSGKGAKVRQQSAPAGALLWGTEYGSGKGTDSIGRAYSNRFKAARNKRGYWINPAVDYYTPIVAKEYIDIIQTIIRKVGLE
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