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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021963 Open in IMG/M |
| Scaffold ID | Ga0222712_10004481 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14596 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (76.74%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.1516 | Long. (o) | -121.6883 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000980 | Metagenome / Metatranscriptome | 814 | Y |
| F007921 | Metagenome / Metatranscriptome | 342 | Y |
| F050154 | Metagenome / Metatranscriptome | 145 | Y |
| F090386 | Metagenome / Metatranscriptome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222712_1000448112 | F007921 | AGGA | MIDWLVNRIFRWDSLRHAIFDEVHMYDEVDKRMKKYKDEEPTNLTWAEGDTWYGWTYNSNAKRYYFDDIGNTSLMGLWEDQWLREADEAGHV |
| Ga0222712_1000448120 | F090386 | AGGCGG | MAYSRFYDSDIYIYPSVGGWIECAGCFLNISPDEHTIFQSTKIYDDETLLMHMVQHRISGHNIPDGLEAEILRDPERYGILEQ |
| Ga0222712_1000448128 | F050154 | N/A | MKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNDNLQGKGY |
| Ga0222712_1000448137 | F000980 | N/A | MAVQDVSGTCYNTRMTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTNCTLLSVEDATIPYTDSPLPTKEETMETETPAVTVPDTYNANLLVTYKVIRGYSDAEYATDKVASIEWDLHNGRQSQKQANMYSSKIETAKDIITEAYADSDDQETLRSIAEALDISLNRTIEWSATIEVSGTMELDLLADYDTDVEQEIYDNLSVDSQNGNIEVIDQEVTNVREN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |