NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10003180

Scaffold Ga0222712_10003180


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10003180 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18108
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (38.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001923Metagenome / Metatranscriptome617Y
F017613Metagenome / Metatranscriptome239Y
F088512Metagenome109Y
F104757Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000318016F088512N/AMGTKSIRHIVEAAVASHLAAESGLTGVNIYTGDDGDINVLPKAIVLCDSARTPADLPEGAGNYDCSVRVTIFSNADDTTLADHRARCAALAGSMQDLAGLKAVFVASGDATLYDVTPNTEDEGKDERSYATAFTFGLLTVLAP
Ga0222712_1000318019F017613N/AMANSITAAPAVLAEGVIGSLKNKLPVLSGISTVFSSRPGVSGLSIQVPLIGTSTATTFGASGYLTQDDATVTSATVTLIHYKVSSRFSPSNLKEYGAQFFVNNFVQTASIALAQKVMDVINAQVTNANYSTSSTSGADLSYAELVAVQKTLDDAKAPSPRYAVLNSTYVSDLRKDTTIVGNNVLGANIIRDGDLGVIAGARVYQFANLANNSENLAGWVAGPDAIAFASALPETEIPGWEVANAIDPETGLGVQVIMGQEQSGYMNVTATLLAGAAVGRSSSLVRLKTA
Ga0222712_100031805F001923N/AMSASPVNPDDIPPELKDGVVASILGGLAMTARLLLSTEPVTVGWVVRRVFAAAITAALVGYGVQDHIQSTGLRMAAVGAAGYAAPECLDYLLKYIKAKGEAEVAKVTKGAKRVTGKGKPK
Ga0222712_100031808F104757GGAMLYVISIVLSLLGGFVAGLLVARKHADRLKATESEGRKLLDALKGK
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