Scaffold Ga0222712_10001491

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10001491
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28867
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (72.73%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F026867	Metagenome	196	Y
F031026	Metagenome	183	N
F033352	Metagenome / Metatranscriptome	177	N
F042872	Metagenome	157	Y
F044969	Metagenome	153	N
F058791	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000149110	F005502	AGG	MRALCNVVLTFLAFFGFPATQASNVMIDMRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK
Ga0222712_1000149111	F016963	GGAGG	MIEILPEQSTHEQLLNRVRSLARELAEAKAALAAAEGRENDLIDRIRAGL
Ga0222712_1000149115	F033352	AGG	MTDLTKFRLIENIEVMACRNSAERVVKAINRGDLAQAKDLARKHEIAWHLADREFQDLNPPHRNNDFCDDE
Ga0222712_1000149120	F042872	N/A	MQSIINQNKEGDRTVGSNPTPSESYHYNDLRRNGNTAVITEPKRAHYQQLNLNSRGGYDLTAEAFIYHPNPAVFRMWAQQHEASK
Ga0222712_1000149122	F026867	GAG	MSSGRLNDTAMNLRKQDRALSLRQLGAAYGLGYVRIKQMKALPGFPLLAGKVIPSDFDRWRLMQTGLSSLHRASRPRSAAGKARELTSKSDSRVSWRQIENSLKAAVSSLGLPEGNGSSD
Ga0222712_1000149129	F031026	GGA	MPGGLNALLLISALALCSCATTSQTQDGPPPSPDSISYFIYQWDKAERTNPPCPQAYRDLFAESLKALSDSLAETQRERARQ
Ga0222712_100014914	F007747	AGGAG	MKDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGLKQLKKDQEAVIEYVIVKALGAFAKK
Ga0222712_1000149143	F044969	GAGG	MSASLTVDASKLQKAMKAFIGNTKAEASKEMRIQARMLCVSLANSTQPFGLGNDVKKVGEKAVTRDIDRVYKSAASASKDIAKLSLPNGKTKTQNAEQMAKALAALVLGKTGGSKRRRTESAQDLLNRIRQQPYVGTQVGPFDGGKHHESARYGKSKRVPKNQFVRQIVTKDNPLARYFKDKRGNVGIAKSGWAVCAGILGGFRGIPKWVYRHTGGGRVNDQSQTGLGTFSKPYVQMTNTIPWINNVISSGTIQKSIDIQVLKMIKRLGIIANYESKKAGL
Ga0222712_1000149155	F058791	N/A	TSSTFTSALTVASSAFSYRSVVSAGITLNNSNVPVNGRYAVLNPSFYGALLNDTTVVANPQITGDLVRTAGIGNVAGFNINQYSAVPSNSITLGGFFAQQEALLIATRVPEVPTGVPIPGDISVVTEPRTGLSVQVRENYDVVKGMLQRTYALIYGVKAGEPASLVRINGS
Ga0222712_100014917	F020510	AGGAG	MSLVDLLTMFSARVICTYTPEQYADCVREARANRHRWGMGQW