Scaffold Ga0222712_10001447

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10001447
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29265
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.89%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063704	Metagenome / Metatranscriptome	129	Y
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F084221	Metagenome / Metatranscriptome	112	N
F093876	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000144711	F072341	N/A	MSKRLGALAHQSFSRSLSAEEINMVEAINSPKLHSLFEKEFRELIAQAAVINSIKALPSDIEVTLLQQLTQNTYRTTSIKDWQNAFLLNAVGKEWDRVDAYNLFSISFMADVFKRYEEYKAKTWRELNKALILPEAEPREYTPTNPIDDLHADAERYKNGKQTWVEISAPYNCQRLFRQGIYKKSDWMPEVWERMDDLAEQRIAQRWKDANKLRNEGTEQDFINAKKIELSRIVYIDIIKQINKEKS
Ga0222712_1000144716	F066778	N/A	MLKAQLPTKIGERTSSIIPMSYNREPDWNKLKPSIDWDEMEEKLAEKLSTYINQNKIKQTVMNQGIVKSQKFVRTWNSSNGDIHYFDIVLENGEVGQVGVKDMQSPKIAVGATIHYTSEERTGPTGRKTTNFKLQNPNPFNGAGKGIVQSAYTPRKESPEVQNSISRSVALNNAVVFCDKRGAKPSEVLEAAEIFLAWLKEEDVKVSSPINTKLDEASDDEMPF
Ga0222712_1000144722	F070109	GAG	VRDTLVSLTTKEVRALLKLKAERDYLKTQFITLSKSDSISAIVIKDQQKSIDAWALTNEKTSQQLIKSQEDLYKQTARKEAWRNTALIGIPISFIGGIIFTLFF
Ga0222712_1000144723	F077297	N/A	MTKDQIKGAIVIAVAITICIIIQTLYIRIKQDEKTIEGYERRADRATKVIDSLEATNVQRMLQIEELSEELERNKERYEANISAIDSLDRHGLRRAMHNLLSELAGERYPGQSND
Ga0222712_1000144725	F084221	N/A	MSSKEQQIAEGVTGTVSSILLSVPAWMLDIEFALKIICLLLSAAASIFTIYKMNKKRR
Ga0222712_1000144741	F063704	N/A	MITDSGYIETLDKQEAIEWGKYEVVTEEIPDEEPA
Ga0222712_100014477	F093876	N/A	MNLFKKKKEVVDLNAKLLPELCSTYVVQWNYSDEIGMEATYADNVPFMFDARKCVGIQAEVEFRSDGTYYVGQRTIALMQGIDNGIVIDVPYNEFKKHFQELKSNIITNDYIISRG