Scaffold Ga0222712_10001398

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10001398
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29830
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (45.83%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012017	Metagenome / Metatranscriptome	284	N
F017837	Metagenome / Metatranscriptome	238	Y
F022191	Metagenome	215	N
F022193	Metagenome	215	N
F028156	Metagenome	192	N
F042315	Metagenome	158	N
F050991	Metagenome / Metatranscriptome	144	N
F051873	Metagenome / Metatranscriptome	143	N
F057334	Metagenome / Metatranscriptome	136	N
F105021	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000139813	F042315	AGG	VKKPKQYPRRWDLQHKPSGKWQSVLVQRRDPKDRDARRNAKTLPDLSPTELYEVIDEGYHYFWNRRGRVPPQTTVIRWAKA
Ga0222712_1000139815	F105021	GGCGG	MDFLTMNTLNKLLARWGYQLTRSDAVAEQSELQMKYAALEVATDELREQNKELKRKLACRTSGEWYWKKKAQRAREVIE
Ga0222712_1000139823	F022191	GGA	MPEGIKTDGSHGRTTYSPQKLVNDLAVATLEGRGLGLKKHPRLGYVTEEDKRLFQRIVGITVEEFNQRLIGKLDNLADRIVDRMLDTVEDTPLNSLGFNLAVAIDKRQRLAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKAPVPTIQAAPVELPNPNDIDVKKPAPVRVAD
Ga0222712_1000139827	F012017	N/A	MAQKRILIGTPLKGDIPKSYFRTSLQMVTAEIPEVKLDWILLDGPAVQIARNEIAAYAVEQKFDELIFWDKDVLAMRNGEDVTASALMRLIGHDRDIVTAVYSSRSLETHWHVQAIKGEEPDEAGLQRVERASIGFSKIKVPVFKKIAAQNPDRVAVLTDPNRAPKSVPELFPMELKGRNTSDHRLKQVWAALSEVKNDEVLRARIERELTIRYDESNVFISEDYGFCDLARAAGYDIWMDTLMVLGHQASVVVPIESAKLLEMLSEPWRKDELAIIKQQMLEAQAAKKK
Ga0222712_1000139828	F057334	N/A	MTDVSELMVTKRAVDEWLIEPDVEGAREYARLSIYAEPEGLNIDGQGLIPWAQIESSRLTYTVHIKKRHAAR
Ga0222712_100013983	F028156	AGGAG	MVADKNSIHVSGDELLARAKLCAKLLEVVDEITLASGLISEGKYWDAYRVTNKIELMAAEVSSDLHGIDLAAGDQT
Ga0222712_1000139831	F050991	N/A	MKKRRDPHLTSAEKFGRLRQAMFRLVGNDGFQDFIEELREMQHSTMIDLCSDAVVKDERMTLAATGELRAYSQIIGLYDDFVQQQMQQAEIDAEQRAG
Ga0222712_1000139841	F017837	N/A	MQTNIVPVQVWPSEANVLYIRSITLGPPPSYYYELQNVEVIPGSPAIPGTTEQLDPTTGAVIVPATDPVDAVPDTYKVTVLKNGNVSMTEAQWNAWPADADDDKVQLDAISENLGLTRA
Ga0222712_1000139842	F051873	N/A	MSKPKELIKAEIISQLQQQSMSVLVDSLAEAQARIAELEAKVAELTKGA
Ga0222712_100013985	F022193	N/A	MTHTDTLDQHVREYYLYHDEQTKFFDDLASANKPIDTGLDEYVALQQMERLHDETGTWNADVWAEKGWW