Scaffold Ga0222712_10000169

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10000169
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93550
• Total Scaffold Genes: 126
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (47.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F063622	Metagenome / Metatranscriptome	129	Y
F071779	Metagenome / Metatranscriptome	122	Y
F088534	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_10000169118	F063622	AGGA	MKLHEQLTEWYYTHNAVQSGGVIANEIVDVVKCWLKTHHREESKYDADYNAGWMDCIETLEKDAR
Ga0222712_1000016962	F088534	N/A	MFSTTITNPKSFGATYQWAILSVLPMDSNKKVHGLNSPEIKSALGLSNAARTSLCLMLKEMAGKGLVRRYDLKIGNRRIVSYKRLMPLRKRERIARFLGL
Ga0222712_1000016966	F001968	N/A	MFDELWNEIQETPGEIFDILELQEEQEKFDFDGYLAADYDF
Ga0222712_1000016972	F071779	N/A	MTTRTTYRVIGFGTNEHGFFNEFAHCGTIGYACGFYNGHLQDPEMDGAVLIRVNHEDWEVIQEFGTIPYSVVCGPGGNFKVERAVDMVIV