Scaffold Ga0222713_10205878

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10205878
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1312
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024535	Metagenome	205	Y
F037637	Metagenome	167	Y
F104496	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_102058781	F037637	N/A	MNWQIKKKRTKQVTVSFEWTEKGDLISILSDLSALISSGVETYHNQKKSILTADKWHEIEFSQKYVDKIHEEVESDINGELKLVIKSNL
Ga0222713_102058783	F104496	N/A	MKKRTGILINSVIILLGYTYESYLLLGIGVICLSLVLISKSKKHEVKN
Ga0222713_102058784	F024535	N/A	MAKKKIKIDTEGIDVNLEKDGTNIKLDIDTKNVDIHVLKDEVNKEFKLDSKNIDIDISKTAEGLEVKVESKGGIWKLIAKRVVKFILRRFKIGK