Scaffold Ga0222713_10081486

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10081486
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2364
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018177	Metagenome / Metatranscriptome	236	Y
F033808	Metagenome / Metatranscriptome	176	Y
F042772	Metagenome / Metatranscriptome	157	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100814861	F042772	AGG	MAREIVKNLKFKKHTGKFFDPELFAQLLDESYRNTKRAD
Ga0222713_100814863	F033808	GAGG	MEMFLICGIAIGFLIGYPLGLFIDKLDKDIKNDAR
Ga0222713_100814865	F071247	GGAGG	MGSNNKIPFNKTIIKDGRIVRIRKDGAIKADLGPYKAKPAKDKK
Ga0222713_100814867	F018177	AGGAG	MPNINEFLGRPEKIFKNELEKMGGEKPCSKCDKNSEEYFWDAVNMTISWECPDGHKNSYVVG