Scaffold Ga0222713

Basic Information
Taxon OID	3300021962 Open in IMG/M
Scaffold ID	Ga0222713_10066632 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021962 Open in IMG/M

Scaffold ID

Ga0222713_10066632 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2680
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

2680

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.06	Long. (^o)	-121.8	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.06

Long. (^o)

-121.8

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001460	Metagenome / Metatranscriptome	690	Y
F001781	Metagenome / Metatranscriptome	635	Y
F003603	Metagenome / Metatranscriptome	477	Y
F007468	Metagenome / Metatranscriptome	350	Y
F034924	Metagenome / Metatranscriptome	173	Y
F059952	Metagenome / Metatranscriptome	133	N
F082666	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1006663210	F001460	GAGG	MLGYTEEDLNRMINAVHDVKLFYLRSPSDLMNKDPLVKDLQDVVSFMQGLWAEGYFD
Ga0222713_1006663211	F059952	N/A	DEGQYYADKQFAEMSGDKFIYDEFNKFYNLKEGDEDYLC
Ga0222713_100666322	F003603	AGGCGG	MKNKEQQIGELLANSVEDHFFNPAALGRYLADQPIYTIDRIMEVVAWIVEKQAERYRREVANDGTVCEGLIIANMLDKVIDKIKVSNDLKSVQLPITPKERGEYIKSLPETKEQSYKYSWLHETNNGSNAQVNVTPVI
Ga0222713_100666324	F034924	GAGG	LPTYRVFGTKYQNYYTIVSADDEYQAAEIANSRPSNEWDSIPTDDEIEATDVFLDEDTSIDLQLNM
Ga0222713_100666325	F001019	AGGAGG	MTNYEPSLEILEVAYDVSPGGVRTFEIYDRLDDDTLSIPIYETESLTKAVEYCYNLDKDFIVRTYAEWEMRELLADI
Ga0222713_100666326	F000441	AGGAGG	MKMSDPYIDEQLNKAQKLLWGGSETENIEAHNIIAKLIKDRMSEQEGQND
Ga0222713_100666327	F001781	GGAG	MKPEDKDKLNECLKILDTTDLGLSLVWLWTWSTINNILDDDTYKAKVTQDQMWDHLCEAVEAGHGFSLEYGAEQHQDDVLEWMMNRDYIVDPMWEEEEDEDE
Ga0222713_100666328	F082666	AGG	MIETAEALPESIQRAVDLGISGIDIMHGELKIMMLVAEQELANAQAIEDETEEAMDSMERKYWEGQLDALVELYRLTYDISFAIGARDEARG
Ga0222713_100666329	F007468	GGAGG	LTKSSYFLEYVKLHLTSLNQDLEAHDNPETKIHIQGQIDATRHLLSVAFDIMKSSNERYNND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222713_10066632

Overview

Ecosystem & Geography

Associated Families

Sequences