NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10045826

Scaffold Ga0222713_10045826


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10045826 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3383
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002387Metagenome / Metatranscriptome565Y
F005504Metagenome / Metatranscriptome398Y
F009685Metagenome / Metatranscriptome314Y
F013184Metagenome / Metatranscriptome273Y
F013414Metagenome / Metatranscriptome271Y
F033433Metagenome / Metatranscriptome177Y
F050154Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100458261F005504N/AAVTILTKLSNLVPNCLLTLEYEEETGWGGELEIVRGEVKEILDYENRCYACQSFDTLSYCEDDCGEFCLSCNEGSWQDEEAMKECQTHSVLLPLKTYTQEEALNG
Ga0222713_1004582611F013414AGGCGGMKTREIKVAEQLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRYNDELTTESGIYNSGLTSEGLFLANELNETLTKLIKTYKWENIKLPVDPDKVIKKLPKVAEQSYRHSWLHDKEHRDPVLVSHPFI
Ga0222713_100458262F002387AGGAGGMASFLEDVNQMVIDACYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDEFIQSEFNKFYNLKEGDEDYFEQL
Ga0222713_100458263F013184GAGGMRITLNNYNFVIKLAGSVLANNEKEAHEKINLHLDDLGEVDSSRYDLGWPDVSWDMEYDL
Ga0222713_100458265F050154GAGMKLHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNENERI
Ga0222713_100458267F033433AGGAGMNDISLEILEVNYGISPGGIDEFEVYSLDERDHSSPPIFSSPILEESVRFCYNLGKDFTVRTLAQWEERELAYEASR
Ga0222713_100458269F009685GAGGMKMSDQHIDAVLAEAQGLLWGGSETENIAAHNLISKLIQDRMSEKNLK
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