NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10038514

Scaffold Ga0222713_10038514


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10038514 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3763
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F002598Metagenome / Metatranscriptome544Y
F004431Metagenome / Metatranscriptome438Y
F007363Metagenome / Metatranscriptome352Y
F019325Metagenome / Metatranscriptome230Y
F024319Metagenome / Metatranscriptome206Y
F101047Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100385141F101047AGGAMGRMKELYTQILECDTCYGNGWLYYGDENNYDVEACQCNPLSFFQENK
Ga0222713_1003851412F004431AGGAMTITYSLWDGAQLLGVDFKATSADEMNKVVADLQKVSKNVVAHMRKVEQN
Ga0222713_1003851413F019325AGGCGGMTILTEELYSTIVHDFHNGGVKSSYGLNAYTRKALLRDLLSSKACYCINCLCEVTH
Ga0222713_1003851414F024319AGGMTNRIWESLNDYQNESDAKRLGYVTCSAGCGRVTAWSLCVMCGGNYATHNLLGKAVK
Ga0222713_100385143F002598AGAAGGMATKLYTIEGLLIGKNYRSNSRHFEGEIINATPRPEIWYGEKTEAYLIEINTRSLRNKFATIAVKVGE
Ga0222713_100385146F007363N/AMRGYSIVDLLVDQYYAPTSLRRRFNGGIINFAEKREDTYPAEGWQDFAIRYRPTNSLQDNWATVSVRVED
Ga0222713_100385148F001562GGGGGMTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAELENE
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