NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10023101

Scaffold Ga0222713_10023101


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10023101 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5166
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002245Metagenome / Metatranscriptome578Y
F004051Metagenome / Metatranscriptome455Y
F017134Metagenome / Metatranscriptome242Y
F017829Metagenome / Metatranscriptome238Y
F054797Metagenome139Y
F058756Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100231011F058756N/AVKAQFLCYESQIKSLEKLVYVSGVRYNTHMTQYQKYTWVCTGDCDALIEYTLKDGFGWPNGVMQLTCPCNSRCTLVSVEDATIPYTDTPLQTKEEPMETETSAVTVPDTYNANLLVTYKVIHGYSDAEYATDKVASIEWSLHNGRQAQKHNSVLNGKIDAVKEIICEAYAD
Ga0222713_1002310110F017134GAGGMELFTVACLNYEICGAQETFDSIEEYEIYGDDYTCAECYDAEEMEFYELSGWADSDALASAGFGMDEDY
Ga0222713_1002310112F054797N/ALFSKIVNDFAEMFAKDNERFDVKRFHEASGYNVPNFTSR
Ga0222713_100231013F017829AGGAMANRFRVEIYDANKLNDVTIYLEQGVDKEYLTELVFSNLRKFSGKVNAYVFDNVKKKKTTAMFLDETVVDKFNSNNQLTAKELGFI
Ga0222713_100231015F004051AGGAMTIEGKLYQVGDLFTTLKSKRTGVIKEIIPQASGSVRVLLEMPTKETRWTSVSAKTLLG
Ga0222713_100231017F002245AGGMSNQIKVPHSVVFEAIIDLDKIPANLLPALLKLNETDLLAMCKDATVNAISESKFLQIANENNTWAEVIIKGDN
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