Scaffold Ga0222713_10013468

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10013468
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7191
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001125	Metagenome / Metatranscriptome	769	Y
F006984	Metagenome / Metatranscriptome	360	Y
F018349	Metagenome / Metatranscriptome	235	Y
F054797	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100134681	F054797	N/A	PALFSKIVNDFAEMFAKDNPRFDVKRFHEASNYHVPQFSK
Ga0222713_1001346816	F018349	AGGAG	MDYRDGFEDGVKFTREVIIANIRQWALDCIDGSEGQIMDDIADKIEFGTLDNDL
Ga0222713_1001346818	F001125	GGCGG	MGDRANFGFRDRNENIIFLYGHWAGYRMLEQLGNALVQAKPRWNDESYATRICVSQLVNAEWDRETGWGLSVNQILDNEHKIPVVDWAKQTVTLYEEDLQTAVFSMGLQEFSDKYSSQLSMV
Ga0222713_1001346819	F006984	AGGA	MPNWVYNTLTIQGPKEEIDYIKDRLNSPFTLAQETFGMGDISSSGFPTKIQQVTYSNPVFAFFNIHSYKDDGIT