NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10013468

Scaffold Ga0222713_10013468


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10013468 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7191
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001125Metagenome / Metatranscriptome769Y
F006984Metagenome / Metatranscriptome360Y
F018349Metagenome / Metatranscriptome235Y
F054797Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100134681F054797N/APALFSKIVNDFAEMFAKDNPRFDVKRFHEASNYHVPQFSK
Ga0222713_1001346816F018349AGGAGMDYRDGFEDGVKFTREVIIANIRQWALDCIDGSEGQIMDDIADKIEFGTLDNDL
Ga0222713_1001346818F001125GGCGGMGDRANFGFRDRNENIIFLYGHWAGYRMLEQLGNALVQAKPRWNDESYATRICVSQLVNAEWDRETGWGLSVNQILDNEHKIPVVDWAKQTVTLYEEDLQTAVFSMGLQEFSDKYSSQLSMV
Ga0222713_1001346819F006984AGGAMPNWVYNTLTIQGPKEEIDYIKDRLNSPFTLAQETFGMGDISSSGFPTKIQQVTYSNPVFAFFNIHSYKDDGIT

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