Scaffold Ga0222713

Basic Information
Taxon OID	3300021962 Open in IMG/M
Scaffold ID	Ga0222713_10009969 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021962 Open in IMG/M

Scaffold ID

Ga0222713_10009969 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8605
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (81.48%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

8605

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (81.48%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.06	Long. (^o)	-121.8	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.06

Long. (^o)

-121.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001280	Metagenome / Metatranscriptome	732	Y
F001781	Metagenome / Metatranscriptome	635	Y
F007921	Metagenome / Metatranscriptome	342	Y
F039131	Metagenome / Metatranscriptome	164	Y
F078716	Metagenome / Metatranscriptome	116	N
F088905	Metagenome / Metatranscriptome	109	Y
F091936	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1000996910	F078716	N/A	MSDNGTGTTPAPISEPSGAVTSRETPRKYPKQGTRSGIKIDQNKHGIRRETSLDPKPPRKTRPKKV
Ga0222713_1000996911	F091936	AGGA	MSEMNDGLDRSMRLKLVIEDMLKDIDMSGEEWNDRDKNGVAYWEKWDKND
Ga0222713_1000996912	F007921	GGA	MTVIKTALHIGRNGIRMIEWLVNRIFRWDSLRHAIFDEVRLYQSIDRSMWEHEKEGPTNLTWAEGDRWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWLREADEASL
Ga0222713_1000996923	F001781	GAG	MKPDDKDKLNECLKILDTTDLGLSMVWLWTWSTIKNFMEDETFVMKKTEDEMWDCLCEAVKAGMGFSLEFGAEQHYEDVMEWMLNREYMVDSMFEDEEAEDEDE
Ga0222713_1000996924	F001019	AGGAGG	MLSYEPSLEILEVEYSCSPGGVDTFEIYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEA
Ga0222713_1000996925	F000263	AGG	MNAEDIGLPPHLQRLINYDINGLDIMHGELKNLMLIWEKELEKAQAIEDESEEAMDSMERKYCEGYIDALTAMYKLTYDLSFAIGEKEGQNA
Ga0222713_100099695	F039131	N/A	MAEETYNLEMYFEKKITKAIVDKINNFEFPDDWTPKQVIDYITYKIDRE
Ga0222713_100099698	F088905	N/A	MSENTEKDIETTPVVDTKPEVKVEPKAEVKTEAAPAADSVVDYWANAWANRGV
Ga0222713_100099699	F001280	GAGG	MCVECGCESLGSETGIANIPGGILDVSRDGDSGLTLNMTSTPEQTRQFINE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222713_10009969

Overview

Ecosystem & Geography

Associated Families

Sequences