Scaffold Ga0222713_10005856

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10005856
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11838
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (79.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F026195	Metagenome / Metatranscriptome	198	Y
F035764	Metagenome / Metatranscriptome	171	Y
F037227	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1000585615	F037227	AGGAG	MGNQQTVLEGIIEDVAVELYQRLWNAIPAEDQTEESSKAIGLNSRETTLFVIQRFMDKFNAAAEELKNEPSVD
Ga0222713_1000585629	F035764	GGA	MTVIRTALHIGRSGIKQMIDKLISILFKWTGFREALFAEVNMYNSLTRIMKDPESMEIASAFWEEPDGWKGWTVEENKYYFNDIPEHDLMCVMESLEEMTNGQRSLQ
Ga0222713_1000585633	F026195	AGGA	MGFLDNLEAYIDFTEDIDKDPELESGYSTGKWSDEDDSHPVITPVFGPNR
Ga0222713_100058569	F000671	GAGG	MEKILCYSCNKSKNKLDVRKSSLLPINLLICESCHSAKLEPRWVIILSGRASGPEHVKEFIIKRRYIGNEISASELLV