Scaffold Ga0222714_10101021

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10101021
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1825
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F061853	Metagenome / Metatranscriptome	131	Y
F105175	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_101010213	F061853	GAG	MNKKTISLLGLLVALLAVAYATYTSFSQLKDIDYDIFEADEDEDD
Ga0222714_101010215	F001176	GAG	MSNGTGMDTPPNNTPSGAVTSQEAARKNPSQGKFRSGVNGPRPATKIDTNKHGIRRETILGQKKTKPKKV
Ga0222714_101010216	F001280	AGG	MCVECGCEAFGSESGMSTIPGGMLNVSRDGEAGLTLNMTATPEQRERFINE
Ga0222714_101010217	F105175	AGGAG	MADGKDLNGFTSPKVNDASVWNGEQYAADPAAAFPATDVSNQASAQGPK