Scaffold Ga0222714_10080988

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10080988
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2117
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F011938	Metagenome / Metatranscriptome	285	Y
F013878	Metagenome / Metatranscriptome	267	Y
F080048	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100809882	F013878	AGG	MLNLTELGVEVFIKKAKNITPYWDNYDLIIWKKDHNGFTNIKGMFRENAWGIAEKISVNDNGLWKLPTKYVRHFK
Ga0222714_100809884	F000473	GAGG	MFIDKSSDKQAEHFKYGINQWTGEPNKPVFYTEEMKKKVHQIQKPSMLLMDIVMYPDFLALRLYEDNFLQFDGIKKEMVIDYVGKVKKLIESYGVRCELEGKPSERVL
Ga0222714_100809885	F011938	N/A	MESDASWRANPVKEYYDTTHIVFIHSEQCHGTVEKLGAWASIVRYNKNGIEHNELMENEEFTIIDEIVFKHVEESE
Ga0222714_100809886	F080048	GAGG	MEKILCYSCNKSKNKLDVRKSSLLPINLLICESCHSAKLEPRWVIILSGRA