Scaffold Ga0222714_10079500

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10079500
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2143
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014121	Metagenome / Metatranscriptome	265	Y
F018913	Metagenome / Metatranscriptome	232	Y
F032252	Metagenome / Metatranscriptome	180	Y
F063620	Metagenome / Metatranscriptome	129	N
F090316	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100795003	F032252	N/A	MKLYRYKKDGHLYMLYEQLRPCYNLVAVPYFPNQGVLAKSKRSISMNDFEVVAER
Ga0222714_100795005	F014121	AGGA	MLTNTAYQIWETFKAELTQPATDDMKEALASSIRVISSLIHRDGVLANEPWLTHTAQELDEIADDVEAL
Ga0222714_100795007	F018913	AGCAG	MTNQQRAEELLKVICKSEAHNTAWMLQEVLQQLRKQLSGNDGLYINKNLNTYYLNGREDCLNEIDAICDELELL
Ga0222714_100795008	F090316	GAGG	MPDDLQREEEIFLKALKEYKKKKSQEPTDKTTNTLPAVIAAAL
Ga0222714_100795009	F063620	N/A	YIPLEYHMSVEDFLEVWKDMEMEEEPTQEDYDTFILERGKSYFYDMRGEFERHIRLIEDN