Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10045488 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10045488 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3094
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3094

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F001019	Metagenome / Metatranscriptome	804	Y
F003603	Metagenome / Metatranscriptome	477	Y
F024786	Metagenome / Metatranscriptome	204	Y
F038241	Metagenome / Metatranscriptome	166	Y
F063708	Metagenome	129	Y
F068492	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100454881	F003603	AGGCGG	MKTKEQQVAELLCNYSEDHFFNPASLGGFLADQPTYTLDRIMEVVTWVIEKQARRYEREVENGGMVSEGLALAYKLDQVVDKIKEKNTFNNLKLPITNQERKAIIDRMPKEKTGNYRYSWLHDTDTRGTKVYTEHPFI
Ga0222714_1004548810	F000868	GAGG	MSDPHGIIGNYRKGGSMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQFYADKCFAEMCESNYLKGRFNQFYDLKPGDDNYIEWDEEK
Ga0222714_100454883	F024786	N/A	MPNGRVESLPVYRVFGTKYQNYYTIIEAADQFKAVDLANALPETEWNSIPTDDVIEATDVYLNEDTSDELQLNI
Ga0222714_100454884	F001019	AGGAGG	MSHYEPSLEILEVNYSCSPGGVDTFEVYDKSEIEPVSLPIYETESLTDAVMFCYNLGKDFIVRTYAEWESRELASL
Ga0222714_100454887	F068492	GAGG	MMNTTYLEPRLQKLIDLGETGTNILHGELKNLMLQAEHQYEEAKQIEEDNDYSDAMESMERKYWEGQCDALAHVYALTYQLSFAIAERSKR
Ga0222714_100454888	F063708	AGGA	MSNQLIEYIKLHLISLNQDLEINPESINVVDIPGQIYATEHLLSVAEDIMG
Ga0222714_100454889	F038241	AGGAG	MLGYSKEDLDQMSNAVHDAKLFYIRNSDVTYVDQDPLVDGLLKANDFLQGLWAEGYFDHV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10045488

Overview

Ecosystem & Geography

Associated Families

Sequences