Scaffold Ga0222714_10024650

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10024650
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4603
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008356	Metagenome / Metatranscriptome	334	Y
F011485	Metagenome / Metatranscriptome	290	N
F041765	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100246501	F011485	N/A	PMIKSFKLFIVSILASVAVFAADTESSVRASINAGYNNHYIVNGLAKTSGQGFAGFDIGSTYFGVDGYVGGVILPDSNSIDESHWNVGVGKALKITEKFSLRGDLQLLRHQSSIVGGRNSIELAPKIALVNPYLTPYIRGSHDFNLKQSGYIVGVERPTDVFGWVTVTPALEYGKFTDYDVVAAKIGVSRTFFNHLQPYAEVGWYDNNFSASKYKFASQEFSGDIVAVAGVRWNF
Ga0222714_100246503	F008356	N/A	MNISEFERTKPTKTLKRIKELEKLIKEEQIKTENLYANRIATLDSMLKAVTELKETFLKG
Ga0222714_100246507	F041765	N/A	MLNHKQIIEDSAAFFNKEVDKIIYKVTNAKNEKQRAKYLKQLMALKNRLTLEVKMIDELGNF