Scaffold Ga0222714_10018495

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10018495
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5534
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F002071	Metagenome / Metatranscriptome	596	Y
F006744	Metagenome / Metatranscriptome	365	Y
F038643	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1001849511	F002071	AGGAG	MLEIGQTYTTTQSGIVGIIKAIDNHPSGVARVLLDVNGSERWTSVPAN
Ga0222714_1001849517	F000311	GGAG	MYFELTAPNQLALQRAYWDAEVMGLDPQLIDSLTFNIGTGSIEKVSRIRDKFNLTETYTSEYEPTGYTGR
Ga0222714_100184952	F000447	GAG	MGYIEIFRINEDGAGWVDLSEATPEEILDLEIGLFQEGAL
Ga0222714_100184953	F006744	AGG	MNLEEFKAHVLATRQASKAEALSVLSATISNNNERKEN
Ga0222714_100184958	F038643	AGG	MSDFTNWKSYPFTVDGVEFLSLLNPEGTMYQQVQKMPAQVFTMMNQSAIRELIGKVSLMSKPEIQAELDRVNEGYGQAYLALA