NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10011850

Scaffold Ga0222714_10011850


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10011850 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7362
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F003379Metagenome / Metatranscriptome490Y
F005531Metagenome / Metatranscriptome397Y
F006744Metagenome / Metatranscriptome365Y
F040596Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100118501F040596AGGTGGMGYSKGGRVMLSTAIELLDATRDSLFDEDIMAMAGELHTRRNELPDEIFAKYIFMYSSALSAKVADSVT
Ga0222714_1001185011F006744AGAAGGMNLDEFKAHIIATREASKAEALSVLSATITKSTTKEGK
Ga0222714_1001185012F001562GGAMKSQLEKDLEIKESFIDLLNDVYPTVKIGHSTFTPAEILECCDPVAFAIGLLEHEDYLAELEEE
Ga0222714_1001185014F005531AGAAGMKITYSLWRDSQLLSTGNTATKPEEILAVMEELNKLGKGFTYIVREVEVNK
Ga0222714_1001185017F003379N/AMKKLWAGISVIAIAIFSGAMLSKFLNWAGELEVFDFDLDDSIEDEEL
Ga0222714_100118508F000447AGGAMGYIEIFRMNDEGAGWVDLSEATPDELLNLELGLLNEGIFDTPEAP
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