Scaffold Ga0222714_10009917

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10009917
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8303
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004006	Metagenome / Metatranscriptome	457	Y
F025747	Metagenome / Metatranscriptome	200	Y
F033808	Metagenome / Metatranscriptome	176	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000991710	F004006	AGGA	MTENVDGLITSISMNQVLIAILEEYGKLTVPTLRFLDAGSIDKELVIDYDETIPSFTFSLRDKIEQQ
Ga0222714_100099173	F033808	GAGG	MDLFILGILIGFALGYPLGLFIDKLDKKEKAKNGGR
Ga0222714_100099175	F071247	GGAGG	MGSSNKIPFNKTVIKNGRIVRLRKDGTVKADLGPYKVNHKKAK
Ga0222714_100099177	F025747	AGGAGG	VPNLNEFFSKEKIQPPELERFGGKKPCAKCDKDADEYFWNAVSLTMTWECPDGHENSFRV