Scaffold Ga0222714_10009470

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10009470
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8554
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F056552	Metagenome	137	Y
F073444	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000947011	F002333	N/A	MSTQVQQELNAAQACIYTRTNIRRAYQDFDDTDIAGIYLRGDDCVVVRRDGSQQAYARELIKTAYSTYTHRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYTHALGHLTSNAKLQTHWADKFIHVSDSEKIKALLQSDQTDLGHLVAPDGLRLPNRPLDMDGELDDVQEQQSSFGEPSCSCGSFQRQLSNLSAFQEEIQGFKPWCIHLTWFNKYRELLCKRTDTRNASPSGTPEKCVAWWYAPPSDHISDGRFVLLHTKSGAQAPLSHWRTYKPQEVFTQHHAWDLFFNMMEAGYTPFPGVSLPQLKAAVKKQ
Ga0222714_1000947016	F056552	N/A	MSTPTHDQFTLLYEDDNTKVLHEFKALVADDVVQHLVDFLKGCGYMESNIFECMKELSEMYFDSLSTEVYVMNAGGSKAD
Ga0222714_100094702	F008128	N/A	METVPVPKLTVSFAVDVEVAYNSFGGKTAEEISESLQDELHDLLFELDQVTGVYTSCTAIAIDD
Ga0222714_100094705	F073444	AGGAG	LIPPTDGEDARIKMNCHEHAIEDFNLQLEMNALEINMLTDGNEVLPYNEGRLDELEQKKLKLLVGKRFHQNASHAYWYWLQREKAAK
Ga0222714_100094706	F001018	N/A	MSQITQTKLKDLNILKLYEHYAALEKSLPLLTPESQELAKAELEACALLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLSYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISTDPEFWHTEERELYCVEETVTTTREVVLRSLSGDILDKRIEPKSTTKVLPNLDAIRDAYQTGQQLPAGVQVKQDYSVRSTRVFDRKGMDLAASEYPGELLPEVDPTD
Ga0222714_100094707	F013517	N/A	MFESLFAAVLPVMKDLLWAAAGMLVTYLINKVQTQFN
Ga0222714_100094708	F002738	GGA	MSIDTYGLSSEQYEEFFQKNVRFAAKLYLLNCNILSAEGVGNVDFKTALDMYQEAVYTTNDDCRRYQKANNPEAIKDNDIFGLGPTREELMEEIQAVNVKVEALVDYIGRLVETTTDGLTKLVD