Scaffold Ga0222714_10005018

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10005018
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12727
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003582	Metagenome / Metatranscriptome	478	Y
F007921	Metagenome / Metatranscriptome	342	Y
F010248	Metagenome / Metatranscriptome	306	Y
F013878	Metagenome / Metatranscriptome	267	Y
F039131	Metagenome / Metatranscriptome	164	Y
F061853	Metagenome / Metatranscriptome	131	Y
F084237	Metagenome	112	N
F105175	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000501811	F039131	N/A	MKDNDLYKLEEYFEKKYKKEIIDQIKKFEFPNEWTPSQVIDYITYKIDRK
Ga0222714_1000501818	F010248	GAG	VRKSERIRLLEMEMLRMQFQIEYVSRAIDILLQENKIAGPEMDAGKWYNTKLNKDK
Ga0222714_100050182	F007921	GGAGG	MINWLVNRIFRWDPLREAIFDEVRLYQSVDRAMWEHERENPTNLTWSEGDRWYGWTYNSNAKRYYFDDIGNKSLMGLWEDQWLREADGQKSL
Ga0222714_1000501821	F002060	N/A	MDYTSIVIAISAAVLSGMGTAIIAGLKENKREKVRQHEREQDHLKLEVKDLKIELYKIERELTEWKDKYYNAIQELIGVKAELEETLIKLSFIDHHIEDMQGLDREF
Ga0222714_1000501822	F000671	GAGG	MEKILCYSCNKSKNKLDVKKSSLLPINLFICESCISAKLEPRWVVILAGRSQGPDYVKEFIIKRRYIGNEITASELLV
Ga0222714_1000501824	F000473	AGAAG	MFINKDKDHFKYGINQWTGEPNKPVFYTEEMKKAVHQVKKPSMLLMDIVMYPDFLALRLYEDNFLQFDGVKKEMVIDYVTKIKRLLESYGVRCELEGKPSERVL
Ga0222714_1000501826	F013878	AGG	MLNLTELGVEVFIKKAKNITPYWDNYDLIIWKKDSSGFTNIKGMFRENSWGTAERIAVANNGIWKLPTKYVKHFK
Ga0222714_1000501828	F003582	GGA	MNTYKVKLEVEAEVEAFDEGDALDYANDIFGVDDEIKNVKVISVKEK
Ga0222714_100050183	F084237	GAG	MTEMTSVGDDRDRSMRLKLAIEEMLKDIDMSGEAWNDYDKDGKPYWEKYEERLKYMEENG
Ga0222714_100050184	F061853	GAG	MNKKTITLLSLGLALAAISYVVYNTLTQLKDIDYDLFDIEEDIDHE
Ga0222714_100050187	F001176	GGA	MATPPNTQPSGAVTSQEAARKNPSQGKFRSGVNGPRPATKIDRNKHGIRRETTIGQKKTRPKKV
Ga0222714_100050188	F001280	GGCGG	MCVECGCESVGSEAGIVNIPGGILDVSRDGEAGLTLNMTATASQRESFISGE
Ga0222714_100050189	F105175	AGGAG	MDGKDLNGFTAPKVNDAPVWAPESYTEAPAAAFPATDKSSQDGAGLGNGGK