NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10003189

Scaffold Ga0222714_10003189


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10003189 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16891
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (27.59%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F008081Metagenome / Metatranscriptome339Y
F014605Metagenome / Metatranscriptome261N
F034147Metagenome / Metatranscriptome175Y
F048316Metagenome / Metatranscriptome148Y
F059884Metagenome / Metatranscriptome133Y
F088879Metagenome / Metatranscriptome109Y
F093739Metagenome / Metatranscriptome106Y
F099147Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000318910F034147N/AMAKYHSAPFKEGEIFFYPNLGALANFEDFTGQGIAQAFSGKSIPKLDDIYALLHECHKVACIRKSTQPVEINELKIWIDGREVMKLFNEVLADLLLELGIGNPTEEKKR
Ga0222714_1000318911F059884N/AMLLVGRTKVPYEQLFSLNIKEINALLKGHEIDYKDLVESLRVHALIGLQPHLKKGANLIPSKIWPLPWDNIVKPLESTHEDFAKAKKLLEIASKLERNVKSKNRS
Ga0222714_1000318916F014605N/AMIVNLAIALTDIEGNKITNENGEFMYLSKMVGNALFAAEEKDDPIRLYELAKKVYYSEGDMEISKSDADLIKDKVKAKGFTVLVLGPLYEALKEK
Ga0222714_1000318919F048316AGGMKRFFSWAKGFLSESGEASSKRLVGVISAIALSYTLIRNQNEPLVYSVAALSAAALGITAAEKIFKKPNNEDKS
Ga0222714_1000318923F001775N/AMKDLLDDERIKIAVLAFIAGVILAFIVFPKRELETVYKTTIERLTDTLYITSSDTVYIPKTKIKTEVLRDTILMDFKPKISQFNASFPFDHGSTSVSGEVLGEVLKMTAINDYKLPVVTNTIIETKTETIIKKSKGLYLGANVNSVLNLGASASYVDHKYIFQYQYQPIQKVHQIGVSKKLF
Ga0222714_1000318925F008081N/AMEETQVLNPFGYLTARKVIDENKKPSEWWIDYLEFNEVVAENEFYVLFDDGLLVKKGKSKLTTSQCIKGEKFQSFRKIYGSIPRASL
Ga0222714_1000318927F093739N/AMEYSKEQIKRAIRSNVFCKGKGIIVDMEMEDHPDAGDILYNHFCGIPEPRLNELLQNPRYVIKFELITRHLKHNYK
Ga0222714_100031894F099147N/AMIKLLVDLEPFRKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFEKK
Ga0222714_100031898F088879AGGMRDIATDIRVAIINAISPLTLSGVTLPVYDSELPPTINPANYQNSAAYVLITDQNETETTNNDCTIRQNATFQISIITKFPQGSGGKKLSENISNAIQQKMNLTDIVLPIDLQAINIRKNFSRVQIEQGSSQIAYQKILSYTLDIFFVS

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