Scaffold Ga0222714_10003189

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10003189
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16891
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (27.59%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008081	Metagenome / Metatranscriptome	339	Y
F014605	Metagenome / Metatranscriptome	261	N
F034147	Metagenome / Metatranscriptome	175	Y
F048316	Metagenome / Metatranscriptome	148	Y
F059884	Metagenome / Metatranscriptome	133	Y
F088879	Metagenome / Metatranscriptome	109	Y
F093739	Metagenome / Metatranscriptome	106	Y
F099147	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000318910	F034147	N/A	MAKYHSAPFKEGEIFFYPNLGALANFEDFTGQGIAQAFSGKSIPKLDDIYALLHECHKVACIRKSTQPVEINELKIWIDGREVMKLFNEVLADLLLELGIGNPTEEKKR
Ga0222714_1000318911	F059884	N/A	MLLVGRTKVPYEQLFSLNIKEINALLKGHEIDYKDLVESLRVHALIGLQPHLKKGANLIPSKIWPLPWDNIVKPLESTHEDFAKAKKLLEIASKLERNVKSKNRS
Ga0222714_1000318916	F014605	N/A	MIVNLAIALTDIEGNKITNENGEFMYLSKMVGNALFAAEEKDDPIRLYELAKKVYYSEGDMEISKSDADLIKDKVKAKGFTVLVLGPLYEALKEK
Ga0222714_1000318919	F048316	AGG	MKRFFSWAKGFLSESGEASSKRLVGVISAIALSYTLIRNQNEPLVYSVAALSAAALGITAAEKIFKKPNNEDKS
Ga0222714_1000318923	F001775	N/A	MKDLLDDERIKIAVLAFIAGVILAFIVFPKRELETVYKTTIERLTDTLYITSSDTVYIPKTKIKTEVLRDTILMDFKPKISQFNASFPFDHGSTSVSGEVLGEVLKMTAINDYKLPVVTNTIIETKTETIIKKSKGLYLGANVNSVLNLGASASYVDHKYIFQYQYQPIQKVHQIGVSKKLF
Ga0222714_1000318925	F008081	N/A	MEETQVLNPFGYLTARKVIDENKKPSEWWIDYLEFNEVVAENEFYVLFDDGLLVKKGKSKLTTSQCIKGEKFQSFRKIYGSIPRASL
Ga0222714_1000318927	F093739	N/A	MEYSKEQIKRAIRSNVFCKGKGIIVDMEMEDHPDAGDILYNHFCGIPEPRLNELLQNPRYVIKFELITRHLKHNYK
Ga0222714_100031894	F099147	N/A	MIKLLVDLEPFRKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFEKK
Ga0222714_100031898	F088879	AGG	MRDIATDIRVAIINAISPLTLSGVTLPVYDSELPPTINPANYQNSAAYVLITDQNETETTNNDCTIRQNATFQISIITKFPQGSGGKKLSENISNAIQQKMNLTDIVLPIDLQAINIRKNFSRVQIEQGSSQIAYQKILSYTLDIFFVS