Basic Information | |
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Taxon OID | 3300021961 Open in IMG/M |
Scaffold ID | Ga0222714_10003189 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16891 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (27.59%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
Associated Families | 9 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001775 | Metagenome / Metatranscriptome | 636 | Y |
F008081 | Metagenome / Metatranscriptome | 339 | Y |
F014605 | Metagenome / Metatranscriptome | 261 | N |
F034147 | Metagenome / Metatranscriptome | 175 | Y |
F048316 | Metagenome / Metatranscriptome | 148 | Y |
F059884 | Metagenome / Metatranscriptome | 133 | Y |
F088879 | Metagenome / Metatranscriptome | 109 | Y |
F093739 | Metagenome / Metatranscriptome | 106 | Y |
F099147 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222714_1000318910 | F034147 | N/A | MAKYHSAPFKEGEIFFYPNLGALANFEDFTGQGIAQAFSGKSIPKLDDIYALLHECHKVACIRKSTQPVEINELKIWIDGREVMKLFNEVLADLLLELGIGNPTEEKKR |
Ga0222714_1000318911 | F059884 | N/A | MLLVGRTKVPYEQLFSLNIKEINALLKGHEIDYKDLVESLRVHALIGLQPHLKKGANLIPSKIWPLPWDNIVKPLESTHEDFAKAKKLLEIASKLERNVKSKNRS |
Ga0222714_1000318916 | F014605 | N/A | MIVNLAIALTDIEGNKITNENGEFMYLSKMVGNALFAAEEKDDPIRLYELAKKVYYSEGDMEISKSDADLIKDKVKAKGFTVLVLGPLYEALKEK |
Ga0222714_1000318919 | F048316 | AGG | MKRFFSWAKGFLSESGEASSKRLVGVISAIALSYTLIRNQNEPLVYSVAALSAAALGITAAEKIFKKPNNEDKS |
Ga0222714_1000318923 | F001775 | N/A | MKDLLDDERIKIAVLAFIAGVILAFIVFPKRELETVYKTTIERLTDTLYITSSDTVYIPKTKIKTEVLRDTILMDFKPKISQFNASFPFDHGSTSVSGEVLGEVLKMTAINDYKLPVVTNTIIETKTETIIKKSKGLYLGANVNSVLNLGASASYVDHKYIFQYQYQPIQKVHQIGVSKKLF |
Ga0222714_1000318925 | F008081 | N/A | MEETQVLNPFGYLTARKVIDENKKPSEWWIDYLEFNEVVAENEFYVLFDDGLLVKKGKSKLTTSQCIKGEKFQSFRKIYGSIPRASL |
Ga0222714_1000318927 | F093739 | N/A | MEYSKEQIKRAIRSNVFCKGKGIIVDMEMEDHPDAGDILYNHFCGIPEPRLNELLQNPRYVIKFELITRHLKHNYK |
Ga0222714_100031894 | F099147 | N/A | MIKLLVDLEPFRKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFEKK |
Ga0222714_100031898 | F088879 | AGG | MRDIATDIRVAIINAISPLTLSGVTLPVYDSELPPTINPANYQNSAAYVLITDQNETETTNNDCTIRQNATFQISIITKFPQGSGGKKLSENISNAIQQKMNLTDIVLPIDLQAINIRKNFSRVQIEQGSSQIAYQKILSYTLDIFFVS |
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