NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10002455

Scaffold Ga0222714_10002455


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10002455 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19599
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (77.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014841Metagenome / Metatranscriptome259Y
F042324Metagenome / Metatranscriptome158Y
F043922Metagenome155Y
F056549Metagenome137Y
F077216Metagenome117Y
F099272Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000245515F043922N/AMSRRETQKAIQEAYAKWSEKVAFTSYTGADEKDETVLMEEIQTILQGNKPE
Ga0222714_100024552F056549GGGGGMAEPYVPIARLTTANNLLTELEVVTDGAETSTDDLETAVSNALAHKQTAENLVAERFDLVFLVGA
Ga0222714_1000245521F042324AGGMAWTDFFTKEIAGSKVVVDSNGKPYVSQEIAPKEYVEVELNIQQDALPYNIYFRRFDAVGGELENRLFAQVGDRDLALKSVNQITAKRLNSFELVLDGE
Ga0222714_1000245526F014841N/AMGKQEEHKKPSAIDDALAEIGRIAFVEPAICTGWVLVSEWMGEGDKDYWTLTLADDQNPDWRHLGLVHHGLKNWEGNDDVGLRDKPTNT
Ga0222714_1000245531F099272GGAGGMKCYLCGSEFRITFIQGKPYCFKCEADASLQAYGLVRQVKERTA
Ga0222714_1000245535F077216GGAGMAKVWVQLWTAKVAGSVQVEQSELAKVQGLENLKALVPMLVEVQEKEWAMVPTVLVKESPLVQVTDLEKESDLARAEALVEVLEPWRD
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