Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10000308 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10000308 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58527
Total Scaffold Genes	92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (33.70%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

58527

Total Scaffold Genes

92 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (33.70%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009329	Metagenome / Metatranscriptome	319	Y
F022640	Metagenome / Metatranscriptome	213	Y
F027828	Metagenome / Metatranscriptome	193	Y
F034907	Metagenome / Metatranscriptome	173	Y
F085684	Metagenome / Metatranscriptome	111	Y
F091925	Metagenome / Metatranscriptome	107	Y
F101038	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000030841	F022640	N/A	MRIAFLIATLALGLRVGLAAHATVNEYQEHQADRFCQIDPNYCK
Ga0222714_1000030842	F034907	GAG	MITLVIGGVILSTFATMFYLEDRDGGGLYDPDPSASYRHKKSNK
Ga0222714_1000030847	F101038	N/A	MQLTNSFPPVDAMVKKIQEFDYVKFCDNVVEFSATAYAIVVGVFSYVWTAFQLWWDDNGEATQVNLIRFVVNVIDFIAAIVIATPKVYRWVKLNSNRLVDALFFQYTFA
Ga0222714_1000030850	F091925	N/A	MTQVSFTSGELLDIISTLEEKENALYDADDKHLAAYYMNLGNQFQKIYDKLQEFVPENRVANLVLAVN
Ga0222714_1000030852	F027828	N/A	MLNKVLMTEELLNEKQLTALRDMLYVYKDLQSEVHNYPPEDTLFTQTQFEIFDIFDIK
Ga0222714_1000030870	F085684	GAGG	MVTKVVYAYAEIEKAYKILKEMVTRENKLHEMDMTIMSQHLDDIQYEILPALEEIVYYDPSP
Ga0222714_1000030877	F009329	AGGAG	MTPYELRFEIFKQAYNMLNDQFCVEHDTAVRWNEVEKKEVPMDYPEFPTLENVLKQAEIINDFVSSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10000308

Overview

Ecosystem & Geography

Associated Families

Sequences