NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10000308

Scaffold Ga0222714_10000308


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10000308 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58527
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (33.70%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009329Metagenome / Metatranscriptome319Y
F022640Metagenome / Metatranscriptome213Y
F027828Metagenome / Metatranscriptome193Y
F034907Metagenome / Metatranscriptome173Y
F085684Metagenome / Metatranscriptome111Y
F091925Metagenome / Metatranscriptome107Y
F101038Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000030841F022640N/AMRIAFLIATLALGLRVGLAAHATVNEYQEHQADRFCQIDPNYCK
Ga0222714_1000030842F034907GAGMITLVIGGVILSTFATMFYLEDRDGGGLYDPDPSASYRHKKSNK
Ga0222714_1000030847F101038N/AMQLTNSFPPVDAMVKKIQEFDYVKFCDNVVEFSATAYAIVVGVFSYVWTAFQLWWDDNGEATQVNLIRFVVNVIDFIAAIVIATPKVYRWVKLNSNRLVDALFFQYTFA
Ga0222714_1000030850F091925N/AMTQVSFTSGELLDIISTLEEKENALYDADDKHLAAYYMNLGNQFQKIYDKLQEFVPENRVANLVLAVN
Ga0222714_1000030852F027828N/AMLNKVLMTEELLNEKQLTALRDMLYVYKDLQSEVHNYPPEDTLFTQTQFEIFDIFDIK
Ga0222714_1000030870F085684GAGGMVTKVVYAYAEIEKAYKILKEMVTRENKLHEMDMTIMSQHLDDIQYEILPALEEIVYYDPSP
Ga0222714_1000030877F009329AGGAGMTPYELRFEIFKQAYNMLNDQFCVEHDTAVRWNEVEKKEVPMDYPEFPTLENVLKQAEIINDFVSSK

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