Basic Information | |
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Taxon OID | 3300021961 Open in IMG/M |
Scaffold ID | Ga0222714_10000308 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 58527 |
Total Scaffold Genes | 92 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (33.70%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009329 | Metagenome / Metatranscriptome | 319 | Y |
F022640 | Metagenome / Metatranscriptome | 213 | Y |
F027828 | Metagenome / Metatranscriptome | 193 | Y |
F034907 | Metagenome / Metatranscriptome | 173 | Y |
F085684 | Metagenome / Metatranscriptome | 111 | Y |
F091925 | Metagenome / Metatranscriptome | 107 | Y |
F101038 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222714_1000030841 | F022640 | N/A | MRIAFLIATLALGLRVGLAAHATVNEYQEHQADRFCQIDPNYCK |
Ga0222714_1000030842 | F034907 | GAG | MITLVIGGVILSTFATMFYLEDRDGGGLYDPDPSASYRHKKSNK |
Ga0222714_1000030847 | F101038 | N/A | MQLTNSFPPVDAMVKKIQEFDYVKFCDNVVEFSATAYAIVVGVFSYVWTAFQLWWDDNGEATQVNLIRFVVNVIDFIAAIVIATPKVYRWVKLNSNRLVDALFFQYTFA |
Ga0222714_1000030850 | F091925 | N/A | MTQVSFTSGELLDIISTLEEKENALYDADDKHLAAYYMNLGNQFQKIYDKLQEFVPENRVANLVLAVN |
Ga0222714_1000030852 | F027828 | N/A | MLNKVLMTEELLNEKQLTALRDMLYVYKDLQSEVHNYPPEDTLFTQTQFEIFDIFDIK |
Ga0222714_1000030870 | F085684 | GAGG | MVTKVVYAYAEIEKAYKILKEMVTRENKLHEMDMTIMSQHLDDIQYEILPALEEIVYYDPSP |
Ga0222714_1000030877 | F009329 | AGGAG | MTPYELRFEIFKQAYNMLNDQFCVEHDTAVRWNEVEKKEVPMDYPEFPTLENVLKQAEIINDFVSSK |
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