Scaffold Ga0222715_10131485

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10131485
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1575
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017635	Metagenome / Metatranscriptome	239	Y
F038600	Metagenome	165	Y
F088553	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_101314852	F017635	GGAG	VSKDFLDMNDLCDDSLEALIQHYLKLKHRMPDNLSVRERLLELEREQFNRELKADAESKANNREREASTIEGVIRQNTDNPL
Ga0222715_101314854	F038600	N/A	MSVTIYLTDHRGKQIAFFYRIDSERYSTAPSIIWACRQHPEYQGRAESKEDFIEQAKSVMKQLNKISQKTCSTCEKIP
Ga0222715_101314855	F088553	AGG	LNLKGTAMKEFEVELSATTYRTFYITAESAEQAEELAWEVLDEDEEISGAWKDNAKLESVEPCQ