Scaffold Ga0222715_10000878

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10000878
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29727
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (64.10%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006106	Metagenome / Metatranscriptome	381	Y
F015720	Metagenome / Metatranscriptome	252	Y
F016961	Metagenome / Metatranscriptome	243	N
F018915	Metagenome / Metatranscriptome	232	Y
F025727	Metagenome / Metatranscriptome	200	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1000087810	F025727	GGA	MTSRHQYPLVESIKVVRLSSGRTIRITRDRTKQDLKLIHGDGDIHLTCVTHADDPIEMIKTLARLEDVRSVELTDEKGNGIIVHKQK
Ga0222715_100008782	F006106	AGGA	VGRPLIPVSEADQKKALEACKLGIPLERVAILCGFPSGNAGRWHDFLKRNPSFADQLEKARLEGELELSSVVRQCGNGWQGSAWLLERTRGYVARAQLDHTTKGKELSVSGSLLGAFGGQAK
Ga0222715_1000087822	F016961	N/A	MNTALTIMGMAILLPLCVIAGIYVGHSLTIKSQQTNDKQNNRSL
Ga0222715_1000087835	F018915	AGAAGG	VNWIYQILKALLDWFRETPPTDIQHGKAPEALKNDLADRITGLPRLPDDQGGPGPFR
Ga0222715_1000087836	F015720	N/A	MKNTKTTLAGIGAILVAIGGAMKALFDGDPTTHLDITTTIAAVTAGIGLIMAKDAEKKAE