Scaffold Ga0222716_10018208

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10018208
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5230
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019319	Metagenome	230	N
F037220	Metagenome / Metatranscriptome	168	N
F040082	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_1001820810	F037220	GAGG	MSDEQDLLAGGGPKLPSLKFEKIGDVHSGIVTDVKKLEDRDPAGVAKTWPNGDPRFVYVITIKTEKEGDANIWARGAMITAIREAAKQASVTELTGNKISVKYSADGEKKAGFNAPKLFAAKVEKVATDDRW
Ga0222716_100182087	F040082	GGAGG	MTGDTFAMSQEIIELQTRVAELSVALEHMTEQRDNAVDAAESLHKELEACRDRIKSLGGQLDRLRVHIQQGIEL
Ga0222716_100182089	F019319	GGAGG	MTKKDIQDAIAFLERQFVGVGEQDRLFEVIAALKQELYRRSKK