Scaffold Ga0222716_10001130

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10001130
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22498
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040673	Metagenome / Metatranscriptome	161	Y
F051183	Metagenome / Metatranscriptome	144	N
F097161	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_100011301	F040673	N/A	IQMETNKKDMDDMWVCDYCGTEEVDEKAWVNMNTLEVTECVEGTTYWCNNCNDEVAPLTYFEWTEKIAEECGGNKDKYDEITAGSRM
Ga0222716_100011302	F097161	AGCAGG	VNNEIANGKEQIDATISIDVYYSFDEEEGYYIDTDTMREEFEKALDEIEDDISNLNHERNEHLRTKHMEG
Ga0222716_100011306	F051183	AGGAG	MAITGTKVKTNTSNKNWFVNQCRIVEAEQIDSQYNDCSIRLKLEDKDNGYNYTTFINQNFEKDVNGIVTGMAYPEDLNTLYLASGKDINVSDIGEVNVDTLIDSEVAVINYAASGKYKRATWGVVSNPNDTAELEKKFMAQIAKGYPKNYQKPQDTMVEEMLGNREPAKTETVDDLPF