Scaffold Ga0222718_10271280

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10271280
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 892
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021440	Metagenome / Metatranscriptome	219	Y
F027481	Metagenome / Metatranscriptome	194	Y
F029563	Metagenome / Metatranscriptome	188	Y
F094089	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_102712801	F021440	AGGA	MIKKPTHFAVEDITFYGMDEDNEIITNDKGEAVVYQLKAGVRFKPLEYLCEDMTEEQLEVITNDQ
Ga0222718_102712802	F094089	GAGG	MTNKELIEKLKQHNPNKNLVIYSNDNELMEYDFLGIYENEGQVELHVKEGEKL
Ga0222718_102712803	F029563	GGAG	MKTYVIDFVEEVTSQVKIQAKNLKEAEKIVSSGDFMGDEVIERDHFQITGSYEEGEE
Ga0222718_102712804	F027481	AGG	MSKKYLVKFNCIIGEYEHLSSYVFDKQMSEYQYCKKFWGLKKKNELKTNVFWDDFMENAIEVYSETELTENQYNNLQRL