NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10142345

Scaffold Ga0222718_10142345


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10142345 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1363
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018208Metagenome / Metatranscriptome236N
F054048Metagenome / Metatranscriptome140N
F099208Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_101423452F099208GGAGMGVAVDLKKEEFIGQGFSKKEARTKAHEWCQQTNTCRGCSQVVQLDWWSWKQGYCKDCID
Ga0222718_101423453F018208GAGGMKKILEDFEYIYFFKDAFNSKLIGRPYLINENGFNEDEIKEAKEFIKKNGTKFYTVDDDDLDKTEGYYYSNVHDIDFPPLDKMMADSGHTKLYFFQNNKWSML
Ga0222718_101423454F054048AGGMTNINDIIKPLNRIANALDEVLTLVKKDMEDSKARITAQWDNELDKKEVVKSDENFNYNQLEFPFTEESQ
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