NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10112622

Scaffold Ga0222718_10112622


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10112622 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1586
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019311Metagenome230Y
F027183Metagenome / Metatranscriptome195N
F082722Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_101126222F019311N/AMTFVFKHPSKYRKEKMTKYVKIKDCVVGKKYRFEEHEHTVTEYEYNYSYMTGTCVTNRKQFGEHLIEIKLDFPRKELQGEYDNKLMFYFPHDDNLYSDVKVVEYE
Ga0222718_101126224F027183AGGAGGMTNCRECWDDGYIWTHPSGSEDDKPRFEKCDACDILKDDNEAKAKAGSRSYFLVWWNGFQVNMINGGSKPVSSEILHEDFNEDHGWHEEDIEEVSCLKIGEKYDTGGPIENVTIYRWK
Ga0222718_101126226F082722AGGAGMIKKCGNCKREEDHEGQFDCEDWSEDQNAVLLCDDCFFNDLYKVKLDNK
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