Scaffold Ga0222718_10042992

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10042992
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2924
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008887	Metagenome / Metatranscriptome	326	Y
F067233	Metagenome	126	N
F079942	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1004299211	F008887	AGGAG	MNRGCCNECGYKSDYIIDNNNYADNGYEDLNQVPKDKMLCGVCYEENEDE
Ga0222718_1004299212	F067233	AGGAG	MNNLDTRNCEVCKTNFDWNDELAGCLDIEELLDCSDTEINKWQEQNKNIDLQSYFCSECANKTIQAIEEKENE
Ga0222718_1004299213	F079942	AGGAG	MNKVYVVVDEFYGTIADVNVYKNEPKNLKTISEDESQRCFELEIKENEDED