Scaffold Ga0222718_10022829

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10022829
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4305
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004488	Metagenome / Metatranscriptome	436	Y
F018079	Metagenome / Metatranscriptome	237	N
F021539	Metagenome / Metatranscriptome	218	Y
F089045	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100228292	F021539	N/A	MNKKLEWFIIIFLTVILIGLSACSPNPHVDKQPPHETEQEMNAEITKDMEAMDREKAQAENPQPADFESIVDALGCMFDPSDCPLKKSKEEQKMDR
Ga0222718_100228293	F089045	GGAGG	MKDLMKNKKVWIGAAVIVIIFAWMLWSGSPAPVEAQ
Ga0222718_100228295	F004488	GGAGG	MFRHIRGWIDAYIKKLVDAYDPPKPTVYKLGKKKFVKVKRIRIDPKSKGPYIK
Ga0222718_100228296	F018079	N/A	MYTVEKRKMIYIISRKPTWFHTHCLTPTPGTPLWYDPTWVIGDCELCRMDIDNQDWWNNCSYNQSQRKFYDIIEKELKIWI