Metagenome / Metatranscriptome Family F089045

Basic Information
Family ID	F089045
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	36 residues
Representative Sequence	MKDLLKNKKVWIGAAVVVIIFAWVLWSGQPAPEVAQ
Number of Associated Samples	89
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.13 %
% of genes near scaffold ends (potentially truncated)	10.09 %
% of genes from short scaffolds (< 2000 bps)	71.56 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Most Common Taxonomy
Group	Unclassified (56.881 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (28.440 % of family members)
Environment Ontology (ENVO)	Unclassified (71.560 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (95.413 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.50% β-sheet: 0.00% Coil/Unstructured: 62.50%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF07068	Gp23	11.93
PF00471	Ribosomal_L33	7.34
PF00574	CLP_protease	4.59
PF00490	ALAD	3.67
PF13186	SPASM	0.92
PF01970	TctA	0.92
PF02622	DUF179	0.92
PF13394	Fer4_14	0.92
PF00149	Metallophos	0.92
PF12849	PBP_like_2	0.92
PF05050	Methyltransf_21	0.92
PF07230	Portal_Gp20	0.92
PF13353	Fer4_12	0.92
PF13506	Glyco_transf_21	0.92
PF06945	DUF1289	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	9.17
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	9.17
COG0267	Ribosomal protein L33	Translation, ribosomal structure and biogenesis [J]	7.34
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	4.59
COG0113	Delta-aminolevulinic acid dehydratase, porphobilinogen synthase	Coenzyme transport and metabolism [H]	3.67
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	0.92
COG1784	TctA family transporter	General function prediction only [R]	0.92
COG3313	Predicted Fe-S protein YdhL, DUF1289 family	General function prediction only [R]	0.92
COG3333	TctA family transporter	General function prediction only [R]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
All Organisms	root	All Organisms	43.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
cellular organisms	root	All Organisms → cellular organisms	33.03 %
Viruses	superkingdom	All Organisms → Viruses	10.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.17 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	9.17 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.01 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	9.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.17 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	8.26 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	9.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.17 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	8.26 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.67 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.83 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	9.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.17 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	8.26 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.67 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	1.83 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.92 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	0.92 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	9.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.17 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	8.26 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples	3.67 %
Porticoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae	0.92 %
unclassified Rickettsiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales	0.92 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	0.92 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	9.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.17 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	6.42 %
uncultured delta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	3.67 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.83 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.92 %
unclassified Porticoccaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae	0.92 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	0.92 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	9.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.17 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	6.42 %
uncultured delta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	3.67 %
Roseibacillus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus	1.83 %
unclassified Candidatus Pelagibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter	0.92 %
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	0.92 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.92 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	9.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.17 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	6.42 %
uncultured delta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	3.67 %
unclassified Roseibacillus	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → unclassified Roseibacillus	1.83 %
Candidatus Pelagibacter sp. TMED203	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	0.92 %
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	0.92 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.92 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.88 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	9.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.17 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	6.42 %
uncultured delta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	3.67 %
Roseibacillus sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → unclassified Roseibacillus → Roseibacillus sp.	1.83 %
Candidatus Pelagibacter sp. TMED203	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	0.92 %
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	0.92 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.92 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.92 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000117\|DelMOWin2010_c10147156	Not Available	783	Open in IMG/M
3300000265\|LP_A_09_P04_10DRAFT_1054028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	594	Open in IMG/M
3300001460\|JGI24003J15210_10077390	All Organisms → Viruses → Predicted Viral	1017	Open in IMG/M
3300001472\|JGI24004J15324_10144387	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	557	Open in IMG/M
3300001956\|GOS2266_1021600	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1688	Open in IMG/M
3300001958\|GOS2232_1038323	All Organisms → cellular organisms → Bacteria → Proteobacteria	1697	Open in IMG/M
3300002488\|JGI25128J35275_1094575	Not Available	606	Open in IMG/M
3300005522\|Ga0066861_10003746	All Organisms → cellular organisms → Bacteria	5489	Open in IMG/M
3300005523\|Ga0066865_10092011	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1093	Open in IMG/M
3300005523\|Ga0066865_10123189	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	950	Open in IMG/M
3300005523\|Ga0066865_10126880	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	937	Open in IMG/M
3300005606\|Ga0066835_10104662	Not Available	908	Open in IMG/M
3300005608\|Ga0066840_10016871	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300005837\|Ga0078893_10277512	Not Available	2088	Open in IMG/M
3300005837\|Ga0078893_10875360	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	520	Open in IMG/M
3300005960\|Ga0066364_10156838	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	781	Open in IMG/M
3300005960\|Ga0066364_10295294	Not Available	568	Open in IMG/M
3300006024\|Ga0066371_10139507	Not Available	741	Open in IMG/M
3300006025\|Ga0075474_10251428	Not Available	532	Open in IMG/M
3300006305\|Ga0068468_1145279	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	879	Open in IMG/M
3300006334\|Ga0099675_1668049	Not Available	502	Open in IMG/M
3300006738\|Ga0098035_1071279	Not Available	1238	Open in IMG/M
3300006749\|Ga0098042_1172122	Not Available	525	Open in IMG/M
3300006874\|Ga0075475_10178872	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	918	Open in IMG/M
3300007152\|Ga0101672_1045348	Not Available	748	Open in IMG/M
3300007276\|Ga0070747_1163861	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	795	Open in IMG/M
3300007504\|Ga0104999_1061442	All Organisms → Viruses → Predicted Viral	1631	Open in IMG/M
3300007623\|Ga0102948_1281253	Not Available	509	Open in IMG/M
3300009027\|Ga0102957_1187114	Not Available	740	Open in IMG/M
3300009103\|Ga0117901_1161821	Not Available	1237	Open in IMG/M
3300009481\|Ga0114932_10389231	Not Available	828	Open in IMG/M
3300009593\|Ga0115011_10000691	Not Available	26304	Open in IMG/M
3300009593\|Ga0115011_10119895	Not Available	1880	Open in IMG/M
3300009593\|Ga0115011_10770798	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	794	Open in IMG/M
3300009790\|Ga0115012_11616621	Not Available	561	Open in IMG/M
3300012919\|Ga0160422_10001601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14155	Open in IMG/M
3300012919\|Ga0160422_10064765	Not Available	2130	Open in IMG/M
3300012919\|Ga0160422_10085249	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → unclassified Roseibacillus → Roseibacillus sp.	1852	Open in IMG/M
3300012920\|Ga0160423_10116350	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1885	Open in IMG/M
3300012928\|Ga0163110_10003171	All Organisms → cellular organisms → Bacteria → Proteobacteria	8606	Open in IMG/M
3300012953\|Ga0163179_10041530	All Organisms → cellular organisms → Bacteria	3139	Open in IMG/M
3300012953\|Ga0163179_10985211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	734	Open in IMG/M
3300013230\|Ga0116814_1052555	Not Available	534	Open in IMG/M
3300016745\|Ga0182093_1347518	All Organisms → Viruses → Predicted Viral	1049	Open in IMG/M
3300017697\|Ga0180120_10119021	All Organisms → Viruses → Predicted Viral	1137	Open in IMG/M
3300017708\|Ga0181369_1031290	Not Available	1252	Open in IMG/M
3300017709\|Ga0181387_1017756	Not Available	1378	Open in IMG/M
3300017709\|Ga0181387_1063608	Not Available	740	Open in IMG/M
3300017714\|Ga0181412_1004535	Not Available	4664	Open in IMG/M
3300017724\|Ga0181388_1039033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	1159	Open in IMG/M
3300017730\|Ga0181417_1008659	Not Available	2661	Open in IMG/M
3300017731\|Ga0181416_1046841	All Organisms → Viruses → Predicted Viral	1018	Open in IMG/M
3300017735\|Ga0181431_1098362	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	656	Open in IMG/M
3300017744\|Ga0181397_1003359	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	5428	Open in IMG/M
3300017746\|Ga0181389_1033351	Not Available	1559	Open in IMG/M
3300017746\|Ga0181389_1089124	Not Available	859	Open in IMG/M
3300017764\|Ga0181385_1006714	Not Available	3813	Open in IMG/M
3300017779\|Ga0181395_1163265	Not Available	699	Open in IMG/M
3300017824\|Ga0181552_10139070	All Organisms → Viruses → Predicted Viral	1305	Open in IMG/M
3300017958\|Ga0181582_10647923	Not Available	641	Open in IMG/M
3300020176\|Ga0181556_1283042	Not Available	576	Open in IMG/M
3300020247\|Ga0211654_1001828	Not Available	3793	Open in IMG/M
3300020251\|Ga0211700_1040339	Not Available	501	Open in IMG/M
3300020278\|Ga0211606_1030518	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1140	Open in IMG/M
3300020278\|Ga0211606_1052122	Not Available	822	Open in IMG/M
3300020299\|Ga0211615_1035311	Not Available	739	Open in IMG/M
3300020341\|Ga0211592_1033017	Not Available	1103	Open in IMG/M
3300020368\|Ga0211674_10066244	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	967	Open in IMG/M
3300020374\|Ga0211477_10002372	Not Available	10852	Open in IMG/M
3300020380\|Ga0211498_10063554	All Organisms → Viruses → Predicted Viral	1377	Open in IMG/M
3300020381\|Ga0211476_10257978	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	602	Open in IMG/M
3300020397\|Ga0211583_10124836	Not Available	958	Open in IMG/M
3300020410\|Ga0211699_10010720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	3738	Open in IMG/M
3300020410\|Ga0211699_10094820	Not Available	1107	Open in IMG/M
3300020410\|Ga0211699_10148687	Not Available	882	Open in IMG/M
3300020419\|Ga0211512_10053400	Not Available	1938	Open in IMG/M
3300020420\|Ga0211580_10000047	All Organisms → cellular organisms → Bacteria	86865	Open in IMG/M
3300020421\|Ga0211653_10045260	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2007	Open in IMG/M
3300020436\|Ga0211708_10006023	Not Available	4535	Open in IMG/M
3300020438\|Ga0211576_10410817	Not Available	691	Open in IMG/M
3300020446\|Ga0211574_10502798	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	520	Open in IMG/M
3300020448\|Ga0211638_10007704	Not Available	4547	Open in IMG/M
3300020448\|Ga0211638_10060157	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → unclassified Roseibacillus → Roseibacillus sp.	1664	Open in IMG/M
3300020468\|Ga0211475_10027976	Not Available	3203	Open in IMG/M
3300020470\|Ga0211543_10059707	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1999	Open in IMG/M
3300020471\|Ga0211614_10356263	Not Available	644	Open in IMG/M
3300020474\|Ga0211547_10085639	Not Available	1661	Open in IMG/M
3300021356\|Ga0213858_10123150	Not Available	1267	Open in IMG/M
3300021365\|Ga0206123_10201746	Not Available	884	Open in IMG/M
3300021958\|Ga0222718_10022829	All Organisms → Viruses → Predicted Viral	4305	Open in IMG/M
3300021964\|Ga0222719_10249672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	1180	Open in IMG/M
3300024297\|Ga0228658_1098385	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	722	Open in IMG/M
3300025072\|Ga0208920_1052140	Not Available	813	Open in IMG/M
3300025120\|Ga0209535_1010723	Not Available	5166	Open in IMG/M
3300025120\|Ga0209535_1012212	All Organisms → Viruses → Predicted Viral	4743	Open in IMG/M
3300025120\|Ga0209535_1041056	All Organisms → Viruses → Predicted Viral	2067	Open in IMG/M
3300025120\|Ga0209535_1195660	Not Available	575	Open in IMG/M
3300025127\|Ga0209348_1013225	Not Available	3233	Open in IMG/M
3300025653\|Ga0208428_1019423	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2250	Open in IMG/M
3300026077\|Ga0208749_1055016	Not Available	837	Open in IMG/M
3300026189\|Ga0208405_1028743	Not Available	861	Open in IMG/M
3300027906\|Ga0209404_10424414	Not Available	870	Open in IMG/M
3300029319\|Ga0183748_1023319	Not Available	2140	Open in IMG/M
3300029319\|Ga0183748_1096831	Not Available	686	Open in IMG/M
3300029448\|Ga0183755_1011200	All Organisms → cellular organisms → Bacteria	3497	Open in IMG/M
3300029448\|Ga0183755_1018880	Not Available	2344	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	97.25%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.75%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	34.86%
Unclassified	Environmental → Aquatic → Marine → Unclassified	30.28%
Coastal	Environmental → Aquatic → Marine → Coastal	11.01%
Strait	Environmental → Aquatic → Marine → Strait	11.01%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	6.42%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	2.75%
Volcanic	Environmental → Aquatic → Marine → Volcanic	1.83%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.92%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	30.28%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	27.52%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	11.01%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	11.01%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	7.34%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	4.59%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.92%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	0.92%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	28.44%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	25.69%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	11.01%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.59%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	4.59%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	2.75%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	2.75%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.83%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.83%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.83%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	1.83%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.83%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.83%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.92%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.92%
Water Column	Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column	0.92%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.92%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.92%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.92%
Volcanic Co2 Seeps	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps	0.92%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.92%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.92%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300000265	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300001956	Marine microbial communities from Rangirora Atoll, Polynesia Archipelagos - GS051	Environmental	Open in IMG/M
3300001958	Marine microbial communities from Gulf of Mexico, USA - GS016	Environmental	Open in IMG/M
3300002488	Marine viral communities from the Pacific Ocean - ETNP_2_60	Environmental	Open in IMG/M
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental	Open in IMG/M
3300005522	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257	Environmental	Open in IMG/M
3300005523	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265	Environmental	Open in IMG/M
3300005606	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84	Environmental	Open in IMG/M
3300005608	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300005960	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A	Environmental	Open in IMG/M
3300006024	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006305	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m	Environmental	Open in IMG/M
3300006334	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m	Environmental	Open in IMG/M
3300006738	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG	Environmental	Open in IMG/M
3300006749	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300007152	Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', waterEBds3	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300007504	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a	Environmental	Open in IMG/M
3300007623	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG	Environmental	Open in IMG/M
3300009027	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG	Environmental	Open in IMG/M
3300009103	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um	Environmental	Open in IMG/M
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300012967	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013230	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station5_GOM_Metagenome	Environmental	Open in IMG/M
3300016745	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041411BS metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental	Open in IMG/M
3300017709	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27	Environmental	Open in IMG/M
3300017714	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15	Environmental	Open in IMG/M
3300017724	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17	Environmental	Open in IMG/M
3300017730	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13	Environmental	Open in IMG/M
3300017731	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16	Environmental	Open in IMG/M
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017746	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29	Environmental	Open in IMG/M
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental	Open in IMG/M
3300017779	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16	Environmental	Open in IMG/M
3300017824	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020176	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly)	Environmental	Open in IMG/M
3300020247	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)	Environmental	Open in IMG/M
3300020251	Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555940-ERR599040)	Environmental	Open in IMG/M
3300020278	Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556076-ERR599151)	Environmental	Open in IMG/M
3300020299	Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016)	Environmental	Open in IMG/M
3300020341	Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555908-ERR599066)	Environmental	Open in IMG/M
3300020368	Marine microbial communities from Tara Oceans - TARA_B100001027 (ERX556049-ERR599093)	Environmental	Open in IMG/M
3300020374	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)	Environmental	Open in IMG/M
3300020380	Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)	Environmental	Open in IMG/M
3300020381	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291769-ERR318620)	Environmental	Open in IMG/M
3300020397	Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)	Environmental	Open in IMG/M
3300020410	Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)	Environmental	Open in IMG/M
3300020419	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)	Environmental	Open in IMG/M
3300020420	Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)	Environmental	Open in IMG/M
3300020421	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)	Environmental	Open in IMG/M
3300020436	Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300020446	Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)	Environmental	Open in IMG/M
3300020448	Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)	Environmental	Open in IMG/M
3300020468	Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)	Environmental	Open in IMG/M
3300020470	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)	Environmental	Open in IMG/M
3300020471	Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)	Environmental	Open in IMG/M
3300020474	Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300024297	Seawater microbial communities from Monterey Bay, California, United States - 71D	Environmental	Open in IMG/M
3300025072	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)	Environmental	Open in IMG/M
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental	Open in IMG/M
3300025127	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)	Environmental	Open in IMG/M
3300025653	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300026077	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes)	Environmental	Open in IMG/M
3300026189	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A (SPAdes)	Environmental	Open in IMG/M
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300029319	Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516	Environmental	Open in IMG/M
3300029448	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089045

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOWin2010_101471563	3300000117	Marine	MKDLMKNKKVWIGAAVVVIIFAWMLWSGSPAPVEAQ*
LP_A_09_P04_10DRAFT_10540282	3300000265	Marine	MKNMMKNKKLWIGIAVVIAVAWFMWSGQPAPEVTQ*
JGI24003J15210_100773902	3300001460	Marine	MKDLMKNKKVWIGAAVVVIIFAWMLWSGQPAPVEAQ*
JGI24004J15324_101443871	3300001472	Marine	MKDMMKNKKVWIGIAIVIAVAWFMWSGQPAPEVTQ*
GOS2266_10216001	3300001956	Marine	RYKMKKMLKSKKTWIAVAVVVIVFAWVLWSGQPAPEVTQ*
GOS2232_10383232	3300001958	Marine	MKDFIKNKKVWIGAAIVIIVIGWAVWSGQPAPEVVQ*
JGI25128J35275_10945752	3300002488	Marine	MGGNNMKDLMKNKKVWIGAAVVVIIFAWMLWSGSPAPVEAQ*
Ga0074648_100273415	3300005512	Saline Water And Sediment	MKELLKDKKTWIAIAIIVVIAWSVWSGQPTPEVTQ*
Ga0066861_100037466	3300005522	Marine	MKAFLKSKKTWIAVAVVVVVFAWVLWSGQPAPEVTQ*
Ga0066865_100920112	3300005523	Marine	MKKMLKSKKTWIAVAVVVIVFAWVLWSGQPAPEVTQ*
Ga0066865_101231892	3300005523	Marine	MKKLLKSKKTWIAIAVVVVVVAWALWSGQPAPEVTQ*
Ga0066865_101268802	3300005523	Marine	MKDFLKNKKVWVGAAVVVIIFAWVLWSGQPAPVEAQ*
Ga0066835_101046622	3300005606	Marine	MKNFLKNKKVWIGIAIVIIAIGWAVWSGQPAPEVQG*
Ga0066840_100168712	3300005608	Marine	MKHLKNKKLWIGVAIVVIVFAWAIWSGQPAPEVQG*
Ga0078893_102775122	3300005837	Marine Surface Water	MKAFLKSKKTWIAVAVVVIVFAYVLWTGQPAPEVTQ*
Ga0078893_108753602	3300005837	Marine Surface Water	MKDWMKNKKVWIGAAVVVIVFAWMLWSGSPAPVEAQ*
Ga0066364_101568382	3300005960	Marine	MKAFLKSKKTWIAVAVVVIVFAYVLWSGQPAPEVTQ*
Ga0066364_102952942	3300005960	Marine	MKAFLKSKKTWIAVAVVVIVFAWVLWSGQPAPEVTQ*
Ga0066371_101395072	3300006024	Marine	MKMKDLMKNKKVWIAVAVVVVVFAWAMMGGSPAPEVTQ*
Ga0075474_102514282	3300006025	Aqueous	MKQLLKDKKTWIAIAIVVVIAWALWSGQPAPEITQ*
Ga0068468_11452792	3300006305	Marine	MKNFLKNKKVWIGIAIVIIAIGWAVWSGQPSPEVQG*
Ga0099675_16680492	3300006334	Marine	MKDFIKNKKVWIGAAVVIIVIGWALWSGQPAPEVAQ*
Ga0098035_10712792	3300006738	Marine	MKDLMKNKKVWVAVAIVVIIIAWTILSGNPAPEVTQ*
Ga0098042_11721222	3300006749	Marine	MKHLKDKKIWIGAAVVVIIFAWMLWSGQPAPEVQG*
Ga0075475_101788722	3300006874	Aqueous	ISKHKDNIMKKFFKDKKVWIAIAVVVIAGAWFIWSGQPAPEVQG*
Ga0101672_10453483	3300007152	Volcanic Co2 Seeps	MKKMLKSKKTWIAVAVVVILFAWLLWSGQPAPEVTQ*
Ga0070747_11638613	3300007276	Aqueous	MKNLMKNKKVWIGAAVVVIVFAWMLWSGQPAPVEAQ*
Ga0104999_10614423	3300007504	Water Column	MKDFIKNKKVWIGIAVVIIVIGWVVWSGQPAPEIQG*
Ga0102948_12812531	3300007623	Water	MKDLMKNKKVWIGAAVIVIIFAWMLWSGSPAPVEAQ*
Ga0102957_11871143	3300009027	Pond Water	MKDLMKNKKVWIGAPVVVIIFAWMLWSGSPAPVEAQ*
Ga0117901_11618211	3300009103	Marine	DLMKNKKVWIAVAIVVVVFAWAMMGGDPAPEVTQ*
Ga0114932_103892312	3300009481	Deep Subsurface	MKDFIKNKKVWIGVAIVIIVIGWAVWSGQPAPEVAQ*
Ga0115011_100006915	3300009593	Marine	MKDMMKSKKFWIAVAVVVIIFGYTMWTGQPAPEVAQ*
Ga0115011_101198953	3300009593	Marine	MKHLKDKKLWIGAAVVVIIFAWMLWSGQPAPEVQG*
Ga0115011_107707981	3300009593	Marine	MKHLKDKKIWIGAAVVVILFAWMLWSGQPAPEVQS*
Ga0115012_116166211	3300009790	Marine	MKDLLKNKKVWIGAAVVVIIFAWVLWSGQPAPVEAQ*
Ga0160422_1000160114	3300012919	Seawater	MKHLKDKKLWIGAAVVVIIFAWVLWSGQPAPEVQG*
Ga0160422_100647653	3300012919	Seawater	MKDFLKNKKVWIGAAIVVIVIAWAVWSGQPAPEVAQ*
Ga0160422_100852492	3300012919	Seawater	MKDWKNWMKNKKVWIGAAIVIIVFAWALWSGMQPPVEEIK*
Ga0160423_101163503	3300012920	Surface Seawater	MKELMKNKKAWAAVVILVVVAWALWSGQPAPEVAQ*
Ga0163110_1000317110	3300012928	Surface Seawater	MKDFMKNKKVWIGAAIVVIIFAWALWSGSPAPVEAQ*
Ga0163179_100415303	3300012953	Seawater	MKDLMKNKKVWIGVAVVIALAWFMWSGQPAPEVQ*
Ga0163179_109852113	3300012953	Seawater	VEEIIMKHLKDKKLWIGAAVVVIIFAWMLWSGQPAPEVQG*
Ga0129343_12913372	3300012967	Aqueous	MKELLKDKTTWIAIAIIVVIAWSVWSGQPTPEVTQ*
Ga0116814_10525551	3300013230	Marine	MKAFLKSKKTWIAVAVVVVVFAWALWSGQPAPEVTQ*
Ga0182093_13475183	3300016745	Salt Marsh	MKDLMKNKEVWIGAAVVVIIFAWMLWSGSPAPVEAQ
Ga0180120_101190211	3300017697	Freshwater To Marine Saline Gradient	MKNLMKNKKVWIGAAVVVIIFAWMLWSGQPAPVEAQ
Ga0181369_10312902	3300017708	Marine	MKDLMKNKKVWIGAAVVVIIFAWMLWSGQPAPEVQ
Ga0181387_10177564	3300017709	Seawater	MKDFMKNKKVWIGIAVVIIVIGWAVWSGQPTPEVAQ
Ga0181387_10636082	3300017709	Seawater	MKDFIKNKKVWIGIAVVIIVIGWAVWSGQPAPEVAQ
Ga0181412_10045355	3300017714	Seawater	MKHLKDKKLWIGAAVVVIVFAWMLWSGQPAPEVQG
Ga0181388_10390331	3300017724	Seawater	KDFIKNKKVWIGIAVVIIVIGWAVWSGQPAPEVAQ
Ga0181417_10086592	3300017730	Seawater	MKDFIKNKKVWIGIAIVIIVIGWAVWSGQPAPEVAQ
Ga0181416_10468414	3300017731	Seawater	MKNFMKNKKVWIGAAVVVIIFAWMLWSGQPAPVEAQSF
Ga0181431_10983621	3300017735	Seawater	MKNFMKNKKVWIGAAVVVIVFAWMLWSGQPAPVEAQ
Ga0181397_10033593	3300017744	Seawater	MKHLKNKKLWIGAAVVVIIFAWMLWSGQPAPEVQG
Ga0181389_10333515	3300017746	Seawater	MKNFLKNKKVWVGAAVVVIIFAWMLWSGQPAPVEAQ
Ga0181389_10891242	3300017746	Seawater	MKDFIKNKKVWIGIAVVIIVIGWAVWSGQPTPEVAQ
Ga0181385_10067142	3300017764	Seawater	MKDFIKNKKVWIGAAVVVIIFAWVLWSGQPAPVEAQ
Ga0181395_11632653	3300017779	Seawater	MKNFMKNKKVWIGAAVVVIIFAWMLWSGQPVPVEAQ
Ga0181552_101390705	3300017824	Salt Marsh	MKDLMKNKKVWIGAAVVVIIFAWMLWSGSPAPVEAQ
Ga0181582_106479232	3300017958	Salt Marsh	MKKLLKSKKTWIAIAVVVVVVAWALWSGQPAPEVTQ
Ga0181585_100003013	3300017969	Salt Marsh	MKELLKDKKTWIAIAIIVVIAWSVWSGQPTPEVTQ
Ga0181556_12830424	3300020176	Salt Marsh	KMKDLMKNKKVWIGAAVVVIIFAWMLWSGSPAPVEAQ
Ga0211654_10018283	3300020247	Marine	MKDMMKSKKFWIAVAVVVIIFGYTMWTGQPAPEVAQ
Ga0211700_10403391	3300020251	Marine	MKDLLKNKKVWIGVAVVIIVIGWALWSGQPAPEVAQ
Ga0211606_10305182	3300020278	Marine	MKKMLKSKKTWIAVAVVVIVFAWVLWSGQPAPEVTQ
Ga0211606_10521222	3300020278	Marine	MKDFIKNKKVWIGAAIVVIVIAWAVWSGQPAPEVAQ
Ga0211615_10353113	3300020299	Marine	MKDFIKNKKVWIGAAIVIIVIGWAVWSGQPAPEVAQ
Ga0211592_10330175	3300020341	Marine	RLPIGGYKMKDFIKNKKVWIGAAIVVIVIAWAVWSGQPAPEVAQ
Ga0211674_100662443	3300020368	Marine	MKNFFKNKKVWIGIAVVIIAIGWAVWSGQPAPEVQG
Ga0211477_1000237217	3300020374	Marine	MKDFIKNKKVWIGVAIVIIVIGWAVWSGQPAPEVAQ
Ga0211498_100635542	3300020380	Marine	MKDLLKNKKVWIGAAVVVIIFAWVLWSGQPAPVEAQ
Ga0211476_102579782	3300020381	Marine	MKAFLKSKKTWIAVAVVVIVFAYVLWSGQPAPEVTQ
Ga0211583_101248363	3300020397	Marine	MKDWMKNKKVWIGAAVVIIVFAWALWSGMQPPVEEIK
Ga0211699_100107209	3300020410	Marine	MKDLLKNKKVWIGAAVVVIIFAWVLWSGQPAPEVAQ
Ga0211699_100948203	3300020410	Marine	MKDFIKNKKVWIGAAVVIIVIGWALWSGQPAPEVAQ
Ga0211699_101486873	3300020410	Marine	MKDFIKNKKVWIGAAVVVIIFAWALWSGQPAPVEAQ
Ga0211512_100534006	3300020419	Marine	MKDFLKNKKVWVGAAVVVIIFAWVLWSGQPAPVEAQ
Ga0211580_1000004775	3300020420	Marine	MKNFFKSKKVWIGIAIVVIAIGWAVWSGQPAPEVQG
Ga0211653_100452603	3300020421	Marine	MKHLKDKKIWIGAAVVVIIFAWMLWSGQPAPEVQG
Ga0211708_100060233	3300020436	Marine	MKHLKDKKLWIGAAVVVIIFAWVLWSGQPAPEVQG
Ga0211576_104108172	3300020438	Marine	MKNFMKNKKVWIGAAVVVIIFAWMLWSGQPAPVEAQ
Ga0211574_105027983	3300020446	Marine	MKDFMKNKKVWIGAAIVVIIFAWALWSGSPAPVEAQ
Ga0211638_100077043	3300020448	Marine	MKHLKDKKLWIGAAIVIIIFAYVLWSGQPAPEVQG
Ga0211638_100601574	3300020448	Marine	MKDWMKNKKVWIGAAIVIIVFAWALWSGMQPPVEEIK
Ga0211475_100279765	3300020468	Marine	MKHLKDKKLWIGAAIVVIIFAWMLWSGQPAPEVQG
Ga0211543_100597074	3300020470	Marine	MKKLLKNKKTWIAIAVVVVVVAWALWSGQPAPEVTQ
Ga0211614_103562632	3300020471	Marine	MKDLMKNKKVWIAVAIVVVVFAWAMMGGEPTPEVTQ
Ga0211547_100856394	3300020474	Marine	MKDFLKNKKVWIGAAVVVIIFAWVLWSGQPAPEVAQ
Ga0213858_101231503	3300021356	Seawater	MKNFFRNKKVWIAVAIVVIAGAWFMWSGQPAPEVQG
Ga0206123_102017462	3300021365	Seawater	MGGNNMKDLMKNKKVWIGAAVVVIIFAWMLWSGSPAPVEAQ
Ga0222718_100228293	3300021958	Estuarine Water	MKDLMKNKKVWIGAAVIVIIFAWMLWSGSPAPVEAQ
Ga0222719_102496722	3300021964	Estuarine Water	MKQLLKDKKTWIAIAIVVVIAWALWSGQPAPEITQ
Ga0228658_10983852	3300024297	Seawater	MKHLKDKKLWIGAAVVVIIFAWMLWSGQPAPEVQG
Ga0208920_10521403	3300025072	Marine	MKDLMKNKKVWVAVAIVVIIIAWTILSGNPAPEVTQ
Ga0209535_10107234	3300025120	Marine	MKDLMKNKKVWIGAAVVVIIFAWMLWSGQPAPVEAQ
Ga0209535_10122123	3300025120	Marine	MKNLMKNKKVWIGAAVVVIVFAWMLWSGQPAPVEAQ
Ga0209535_10410563	3300025120	Marine	MKDMMKNKKVWIGIAIVIAVAWFMWSGQPAPEVTQ
Ga0209535_11956602	3300025120	Marine	MKNMMKNKKLWIGIAVVIAVAWFMWSGQPAPEVTQ
Ga0209348_10132253	3300025127	Marine	MKAFLKSKKTWIAVAVVVVVFAWVLWSGQPAPEVTQ
Ga0208428_10194232	3300025653	Aqueous	MKKFFKDKKVWIAIAVVVIAGAWFIWSGQPAPEVQG
Ga0208749_10550163	3300026077	Marine	MKDLMKNKKVWIAVAVVVVVFAWAMMGGSPAPEVTQ
Ga0208405_10287432	3300026189	Marine	MKHLKNKKLWIGVAIVVIVFAWAIWSGQPAPEVQG
Ga0209404_104244142	3300027906	Marine	MKDLMKNKKVWIAVAVVVVVFAWAMMGGDPAPEVTQ
Ga0183748_10233197	3300029319	Marine	MKDFLKNKKVWIGAAIVVIVIAWAVWSGQPAPEVAQ
Ga0183748_10968313	3300029319	Marine	MKDFIKNKKVWIGAAIVIIVIGWAVWSGQPAPEVVQ
Ga0183755_10112001	3300029448	Marine	MKDFIKNKKVWIGIAVVIIVIGWAVWSGQPAPEIQG
Ga0183755_10188802	3300029448	Marine	MKAFLKSKKTWIAVAVVVIVFAYVLWTGQPAPEVTQ

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign