Scaffold Ga0222718_10018451

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10018451
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4905
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F013295	Metagenome	272	N
F079942	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100184515	F079942	GGGGG	MSIVYVVIDEFHGIIDDINVYRNKPKNLKTTSEDEKQRCFTLKIKESNNE
Ga0222718_100184516	F004343	GAGG	MTQHKEMIEEAKRLLNSKRENIPSMSKDFGKDYWVLTYPCGKIVKTYEDKRKNDVIVQESYSGGES
Ga0222718_100184519	F013295	AGGGGG	MKINNLTPKQFARREIIKYLRDLFDNPQNYIKDFDSYTHRQQEEILRFISLDEHRIDKLLNLPMGES