Scaffold Ga0222718_10015189

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10015189
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5508
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038411	Metagenome / Metatranscriptome	166	N
F044429	Metagenome	154	N
F061815	Metagenome	131	Y
F102060	Metagenome / Metatranscriptome	102	N
F103900	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1001518914	F102060	AGGGGG	MEITIDRLKGIALDIKLDAANDLGLENERFHGIVEGLDRAINHLEEVAKND
Ga0222718_1001518916	F103900	GAGG	MSDHRNEIILESLYQKYIDLGYEDSEAQELAAKEFEENSN
Ga0222718_1001518917	F038411	AGGAG	MTQHRERVEQVRRRNRLDNWRKGIKFSLGEAINNGEDVKHTTVYNDDSQTIEYLKSDRKTETIPSPHSEDDLVDLMMRGENATAEAIIRKLAEQENNE
Ga0222718_1001518918	F044429	GGAG	MSELPPIEDRMPGCEWVLVIKYGDPYTNTPLTTGFGPFKTKEDADEFRAQYYYDQIVIADIVPINAVLPQSATELDIDFVPE
Ga0222718_100151896	F061815	AGGAGG	MKVFEDALKNYNSGLFLKMEGSYGRHFVSTFLDSGIIKTLDEPGEKVTDGYGREIQLKKAEIDTDRIDELWIDSPEFMDEVTS