Scaffold Ga0222718_10001128

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10001128
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26707
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (83.61%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017831	Metagenome / Metatranscriptome	238	Y
F025289	Metagenome / Metatranscriptome	202	Y
F041784	Metagenome / Metatranscriptome	159	Y
F044516	Metagenome / Metatranscriptome	154	Y
F071269	Metagenome / Metatranscriptome	122	Y
F085737	Metagenome / Metatranscriptome	111	N
F095522	Metagenome / Metatranscriptome	105	Y
F105234	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000112811	F071269	AGGAG	MAKKNQYKVDFYQTVYLGSQIVEAEDRKQAISDAEDMNWKAGIGLKWADDWEAEIDTDHDYLFICTSHSKQECEDDECNEEYWKIMEEE
Ga0222718_100011282	F017831	GAGG	MIAECMIFLASVIPMGVDESKIIEQHLNCNDHVPQSMQEHASLYVEHFDKDNINTAVRIGWCESRGKVDAYRNDNGDTGLMQFVSWTWNWVAEKYELPMWDTWIVTRYGKPYTGQTSKTDIGFSFDRVQYIPYYNIMFASILAEDIYGRTQWRDWSSSEWCWGDKEKWREKWLNE
Ga0222718_1000112829	F085737	AGGAG	MESEISLKQLPDSLKPIKPLDWKNACDWINARWGKTSWSDDTVLYEDARFWCQEELQGGLQYLLQKGGGFPPTFSELTKSVMEWRGTHLANRLAEFDKKLPAPRGSLRDYLNSIGAESFAHACYLNVQERVKYNKLGIHEDESLYNNWTDSWDKAKETYMPNLQSKESPFDISEEKFSS
Ga0222718_1000112832	F105234	GGAG	MTKYSDNSFEERNFENKQDQADFRMQQMLQEKGFVRGVTESQLEKYPHITGSYQKIGTDPKDGFVPRFYDVRKVLLIPDYVIYPREGVKVFLSEVKGTNKLKEDDFNSLVELNIKAEEFNNTGYSNGVNMEVGLWYFANPSKNKIGKYYSYPTIEKQWMSNDNWKVYEGEKDMNGNPKRYKEMNWKL
Ga0222718_1000112836	F095522	GAG	MEISIKPGTPPEKVFTERSGSKYDEAIQTAIKNRGEWIQVGSTPVSKRDSMYSTASALRGGRLGNIPNGVELEIICRRVNDRIIMFMKSR
Ga0222718_1000112837	F025289	AGGA	MDICEEKQVSRWSMKQEIIDDLENYDEVTDDNIREICDSLVPVYNSELIDLASHYSGEEYWDIWYNNELGGETPLDILRGNVYSLYYQIGCEVLEERENEE
Ga0222718_1000112839	F044516	GAG	MCRDTGYYEPRNDVAVKVVEEMVERKNYSLMVYYLTMAYQEDQHTYMNDLQWVLQNKFEGVDLEAVKNHVEELLLIDDSDRELFEEIDK
Ga0222718_1000112840	F041784	AGGAG	MYTKTIGYCGVDSGQLFITDPCYIKHQEQGNGQWNMEWVDTDNGRSYKTLPDPTLDGETKNFYSKVCEANGREEAGVEVELGVAFGTTHGDGNYAVQGIFDDDDVMVGIFMDLDGRVKGEFEYDMEDEWA