Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10000189 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10000189 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	63368
Total Scaffold Genes	127 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	97 (76.38%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

63368

Total Scaffold Genes

127 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

97 (76.38%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040858	Metagenome / Metatranscriptome	161	Y
F057893	Metagenome / Metatranscriptome	135	Y
F069986	Metagenome / Metatranscriptome	123	Y
F082723	Metagenome / Metatranscriptome	113	N
F100943	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_10000189103	F040858	AGGAG	MSNQRSGKTHKAAANDGMQDMKLRNFFRTAAQLMEDESDAQFYFEQIVEHMNAGGNVMSDDPTTVRRILGV
Ga0222718_1000018919	F100943	AGGAG	MEKFETGYTAEKIIENFAGAYMDGDVVRWVSNDRVPFLDMVTDFATLGLIADFQVELSENTRKIEQTAMLKDYMFAQANRSEEQKNEERMMAQAAFGPNAKVVNVITGEVL
Ga0222718_1000018930	F069986	AGGAG	MLTTYGAMIKNDIIEAFEAAVTNPENINSSGGINWNFVESDMFIPLAVFYDTEYLNDCIGVLVDNYFEVAA
Ga0222718_1000018988	F057893	N/A	MKNVLRCLVIGCLVFFTFNHANAEETYNNGLKKCLSDHNYSIDKFDTIDFTKIASCAMKVRMKIQAAELAELRDFLKHNPRYRVPGQSLNRCWGKPRDMPFESAYLEQTQNGFKAGVSYKDKLPAGCYENAPWDNRDVED
Ga0222718_1000018997	F082723	AGGA	MKLAVFATAATLLVATQASAVDLGNGLTVGGEVDMNYTTGTELWALEATPEVGLGLMGAEVTVGSTFDLMNLNGDDTFKGLDFSAEYAIGATGLTAYGEVSTDSDFEFGNVKMGASFAF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10000189

Overview

Ecosystem & Geography

Associated Families

Sequences