Scaffold Ga0222718_10000155

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10000155
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66882
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 90 (74.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014803	Metagenome	260	Y
F092155	Metagenome / Metatranscriptome	107	N
F093978	Metagenome / Metatranscriptome	106	N
F103091	Metagenome	101	N
F104042	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100001552	F103091	N/A	MKLTTTLRAEYDSLPNEVKEKISYGDYCNDPNVKRFIETAKNIAIGRMAIAIQRRKGNFRNX
Ga0222718_1000015578	F104042	AGGAG	MKKLRQLKKMLSDAHTEIRSSKKKTLPAFGVEMYLLNCIIQCNAALNEKVETKNDATQ
Ga0222718_1000015583	F092155	GAGG	MNKLHGKRLNQLVYDYKISHLDIIPTPPKLSLDKMFKRYIRRYNTYNRMKGVKYD
Ga0222718_100001559	F014803	N/A	MKANQVNINKRETMNKEQKEIVKRINKAFSKLYVLSNITWTPYRDDLFKMNRKDEKQHRVGDWSEYHKDSASINDCAKMFTVKHIAQNLLTIEKWKIKDLLNIRKSCLYAQAIVENYGDKIRKAWLDEDIKYLANLDYVSLVNWELYQEQQEKKVA
Ga0222718_1000015594	F093978	GGA	MKEAFDYLKTRYREEIFNTSYNDHDQRQVLWMAYNMVEKIKGHLESVMNEGKLAAKELDQLQDLTK